Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6257

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6256: 14624 - Hypothetical Protein, at 367934 to 368444 14624 mRNA_6257: 14625 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 368702 to 371060 14625 mRNA_6258: 14626 - K01687 ilvD dihydroxy-acid dehydratase, at 371903 to 374480 14626

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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367,709 + 1.2
367,723 - 0.8
367,727 - 0.0
367,730 - 0.2
367,741 - 0.3
367,742 - 0.8
367,864 + 0.8
367,879 - -0.2
367,893 + -1.5
367,910 + -1.6
368,071 + 14624 mRNA_6256 0.27 -1.4
368,201 - 14624 mRNA_6256 0.52 -0.0
368,287 - 14624 mRNA_6256 0.69 -0.7
368,329 - 14624 mRNA_6256 0.77 -0.9
368,360 + 14624 mRNA_6256 0.83 -0.1
368,505 - -0.2
368,510 + -1.8
368,608 - -0.4
368,655 + 0.3
368,951 - 14625 mRNA_6257 0.11 -0.8
369,082 + 14625 mRNA_6257 0.16 -0.5
369,241 + 14625 mRNA_6257 0.23 3.3
370,093 + 14625 mRNA_6257 0.59 0.2
370,676 + 14625 mRNA_6257 0.84 -0.1
370,696 + 14625 mRNA_6257 0.85 1.7
370,858 + 0.3
371,002 - 1.2
371,210 - -0.1
371,293 + -2.6