Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6166

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6165: 14533 - HMMPfam-WD domain, G-beta repeat-PF00400,HMMPfam-F-box-like-PF12937,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF50978,SUPERFAMILY--SSF81383, at 151697 to 155852 14533 mRNA_6166: 14534 - Hypothetical Protein, at 156004 to 157222 14534 mRNA_6167: 14535 - K11672 ACTR5, ARP5, INO80M actin-related protein 5, at 157768 to 160667 14535

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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155,074 - 14533 mRNA_6165 0.81 1.4
155,074 - 14533 mRNA_6165 0.81 0.6
155,128 - 14533 mRNA_6165 0.83 -1.1
155,185 - 14533 mRNA_6165 0.84 -0.2
155,224 - 14533 mRNA_6165 0.85 0.5
155,226 + 14533 mRNA_6165 0.85 -0.7
155,337 - 14533 mRNA_6165 0.88 -1.2
155,504 + -1.4
155,627 + -0.7
155,645 - -1.6
155,652 + -0.2
155,661 - 1.3
155,822 + 2.5
155,823 + -0.2
155,832 + 0.9
155,926 - 2.3
155,926 - -0.3
155,931 - 0.0
155,956 + 1.1
155,960 - 0.9
155,970 - 2.4
156,148 + 14534 mRNA_6166 0.12 1.1
156,252 - 14534 mRNA_6166 0.20 -0.3
156,729 - 14534 mRNA_6166 0.59 0.1
156,832 - 14534 mRNA_6166 0.68 -1.0
156,935 - 14534 mRNA_6166 0.76 -3.8
156,975 - 14534 mRNA_6166 0.80 0.1
157,097 - 14534 mRNA_6166 0.90 0.5
157,257 + 0.3
157,547 - -1.4
157,681 - 0.2
157,784 + 0.6