Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6106

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6106: 14474 - K08332 VAC8 vacuolar protein 8, at 223 to 3658 14474 mRNA_6107: 14475 - K14401 CPSF1, CFT1 cleavage and polyadenylation specificity factor subunit 1, at 3990 to 10005 14475

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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39 + -1.0
39 + 2.1
40 + 0.4
40 + 0.4
40 + 1.1
41 + -1.3
56 + 0.7
56 + 0.6
56 + -0.5
58 + -0.9
59 + 0.2
59 + -2.5
62 - 2.5
65 - -0.0
77 + -0.5
84 + -0.5
102 + -0.7
137 + -1.2
151 + -0.1
200 + 0.9
208 + 0.8
216 + -1.3
229 + 1.3
348 - 1.4
430 + 1.3
498 - 0.4
502 - 1.0
685 + 14474 mRNA_6106 0.13 0.6
747 + 14474 mRNA_6106 0.15 0.2
755 + 14474 mRNA_6106 0.15 -0.8
946 + 14474 mRNA_6106 0.21 0.3
975 + 14474 mRNA_6106 0.22 2.0
1,245 + 14474 mRNA_6106 0.30 1.8
2,125 + 14474 mRNA_6106 0.55 0.7
2,839 - 14474 mRNA_6106 0.76 0.9
3,125 - 14474 mRNA_6106 0.84 1.0
3,248 - 14474 mRNA_6106 0.88 -0.6
3,570 + 2.6
3,665 + 0.3
3,692 + -0.2
3,706 + 0.5
3,726 + 1.0
3,820 + 1.1
3,853 + 0.3
3,859 + 1.1
3,909 - 0.0
3,929 - 1.9