Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6094

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6093: 14461 - HMMPfam-Permease for cytosine/purines, uracil, thiamine, allantoin-PF02133,PIRSF--PIRSF002744, at 1631626 to 1633865 14461 mRNA_6094: 14462 - K16738 NDE1, NUDE nuclear distribution protein NudE, at 1634041 to 1636155 14462 mRNA_6095: 14463 - KOG0054 Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily, at 1636949 to 1643604 14463

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,633,078 - 14461 mRNA_6093 0.65 -0.2
1,633,364 + 14461 mRNA_6093 0.78 0.6
1,633,485 - 14461 mRNA_6093 0.83 0.3
1,633,505 + 14461 mRNA_6093 0.84 0.5
1,633,515 + 14461 mRNA_6093 0.84 -0.2
1,633,628 - 14461 mRNA_6093 0.89 0.7
1,633,767 + 0.6
1,633,807 + 0.2
1,633,814 + -1.4
1,633,816 + -0.9
1,633,918 + -1.9
1,633,946 - -1.3
1,633,947 + 0.2
1,633,948 - 0.4
1,633,956 + -1.1
1,633,958 + -0.1
1,633,967 + -1.4
1,633,969 - 1.8
1,633,975 - 0.7
1,633,976 - -0.5
1,633,978 + 0.0
1,633,981 - 0.1
1,633,984 + 0.7
1,633,989 + 3.8
1,633,989 - 0.4
1,633,991 + 1.0
1,633,992 - -0.4
1,633,992 - 0.4
1,633,993 + 0.9
1,633,994 - 0.7
1,633,995 + 0.1
1,634,011 - -0.7
1,634,015 + -0.7
1,634,053 + -1.3
1,634,061 - 0.4
1,634,078 - 0.8
1,634,078 - -2.4
1,634,085 - -0.0
1,634,094 + 0.4
1,634,099 - 0.9
1,634,111 + 0.4
1,634,115 - 0.2
1,634,116 - -0.0
1,634,121 + 0.1
1,634,121 + 0.5
1,634,122 + -3.4
1,634,127 + 0.4
1,634,127 - 1.5
1,634,130 + -0.5
1,634,132 + -0.2
1,634,133 + 1.2
1,634,134 - 0.9
1,634,146 + 1.1
1,634,154 - 0.3
1,634,155 + -0.9
1,634,157 - 1.4
1,634,162 + 0.1
1,634,164 + -0.0
1,634,168 - -0.0
1,634,206 + 0.4
1,634,211 + 0.2
1,634,212 - -0.4
1,634,212 - -1.5
1,634,213 + 0.7
1,634,215 + 0.2
1,634,215 + -1.1
1,634,229 + -0.2
1,634,229 + -0.9
1,634,233 + -0.0
1,634,268 + 14462 mRNA_6094 0.11 0.9
1,634,291 + 14462 mRNA_6094 0.12 0.1
1,634,345 - 14462 mRNA_6094 0.14 0.7
1,634,373 - 14462 mRNA_6094 0.16 -0.9
1,634,397 + 14462 mRNA_6094 0.17 -1.1
1,634,426 - 14462 mRNA_6094 0.18 -1.1
1,634,535 - 14462 mRNA_6094 0.23 -0.0
1,634,567 + 14462 mRNA_6094 0.25 -0.4
1,634,695 + 14462 mRNA_6094 0.31 -0.2
1,635,120 + 14462 mRNA_6094 0.51 0.1
1,635,286 - 14462 mRNA_6094 0.59 1.5
1,636,847 - -0.1
1,636,857 - -0.1
1,636,861 - -0.4
1,636,861 - 0.2
1,636,864 - -0.6
1,636,870 + 1.4
1,636,877 + 0.0
1,636,881 + 0.7
1,636,888 + -1.2
1,636,889 + 1.7
1,636,913 + 0.5
1,636,954 - 0.7
1,637,000 - 0.2
1,637,019 + 0.2
1,637,019 + 1.2
1,637,028 + 0.4
1,637,036 + 0.3