Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5940

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5939: 14307 - BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ..., at 1279291 to 1281884 14307 mRNA_5940: 14308 - KOG3975 Uncharacterized conserved protein, at 1282291 to 1283820 14308 mRNA_5941: 14309 - K14676 NTE, NRE lysophospholipid hydrolase, at 1284126 to 1289660 14309

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,281,307 - 14307 mRNA_5939 0.78 1.9
1,281,338 - 14307 mRNA_5939 0.79 -0.4
1,281,362 + 14307 mRNA_5939 0.80 -1.4
1,281,602 - 14307 mRNA_5939 0.89 -0.9
1,281,604 - 14307 mRNA_5939 0.89 -0.0
1,281,635 - -0.6
1,281,741 - -0.3
1,281,750 + -0.6
1,281,754 - 0.2
1,281,756 - 1.6
1,281,769 - -0.6
1,281,775 + 0.6
1,281,792 + 0.4
1,281,906 + 0.6
1,281,918 - -0.1
1,281,923 - 0.2
1,281,932 - 0.8
1,281,936 - -0.1
1,281,937 - -0.4
1,281,938 + -0.0
1,281,945 - 0.1
1,281,948 + -0.0
1,281,950 + 1.0
1,281,954 + 2.1
1,281,955 - 0.5
1,281,979 + -1.3
1,281,988 - -0.2
1,281,992 + -1.7
1,281,997 + 0.8
1,282,028 - -1.6
1,282,031 - 0.4
1,282,033 - -0.1
1,282,045 + -1.6
1,282,065 + 2.0
1,282,066 - 0.4
1,282,071 + 0.3
1,282,078 + 0.5
1,282,084 - 0.3
1,282,086 - 1.0
1,282,086 + -0.2
1,282,095 - 0.5
1,282,097 - -0.7
1,282,098 + 0.0
1,282,112 + 0.7
1,282,119 - -0.4
1,282,160 + 0.1
1,282,224 - -2.2
1,282,237 - -0.7
1,282,246 + -0.4
1,282,247 - -1.3
1,282,377 + 1.3
1,282,517 - 14308 mRNA_5940 0.15 -0.5
1,282,671 - 14308 mRNA_5940 0.25 -0.3
1,282,673 - 14308 mRNA_5940 0.25 -2.4
1,282,675 - 14308 mRNA_5940 0.25 0.5
1,282,699 + 14308 mRNA_5940 0.27 0.9
1,282,809 - 14308 mRNA_5940 0.34 -1.3
1,282,988 + 14308 mRNA_5940 0.46 -0.0
1,283,018 + 14308 mRNA_5940 0.48 0.1
1,283,247 + 14308 mRNA_5940 0.62 2.0
1,283,852 - -0.6
1,283,885 - 0.3
1,283,972 + -0.4
1,284,005 + -1.6
1,284,008 + 0.1
1,284,008 - -0.1
1,284,010 - -0.2
1,284,015 + -0.6
1,284,034 - -0.1
1,284,041 + 0.4
1,284,049 - -1.1
1,284,234 + -0.5
1,284,308 + -0.5
1,284,482 - 0.4
1,284,522 - 0.3
1,284,646 + 0.1