Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5903

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5902: 14270 - K08336 ATG12 ubiquitin-like protein ATG12, at 1206662 to 1207258 14270 mRNA_5903: 14271 - SMART-Parallel beta-helix repeats-SM00710,SUPERFAMILY--SSF51126, at 1207827 to 1210876 14271 mRNA_5904: 14272 - KOG4234 TPR repeat-containing protein, at 1211111 to 1212389 14272

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,206,841 - 14270 mRNA_5902 0.30 -0.3
1,207,139 - 14270 mRNA_5902 0.80 1.2
1,207,299 - 0.1
1,207,670 - -0.5
1,207,759 - 0.5
1,208,188 + 14271 mRNA_5903 0.12 0.5
1,208,192 - 14271 mRNA_5903 0.12 -2.0
1,208,195 - 14271 mRNA_5903 0.12 -0.4
1,208,196 + 14271 mRNA_5903 0.12 1.1
1,208,293 + 14271 mRNA_5903 0.15 0.8
1,208,589 - 14271 mRNA_5903 0.25 0.6
1,208,593 - 14271 mRNA_5903 0.25 -0.3
1,209,090 + 14271 mRNA_5903 0.41 0.2
1,209,096 + 14271 mRNA_5903 0.42 -0.1
1,209,191 + 14271 mRNA_5903 0.45 0.9
1,209,226 - 14271 mRNA_5903 0.46 1.7
1,209,287 + 14271 mRNA_5903 0.48 0.2
1,209,544 - 14271 mRNA_5903 0.56 -0.4
1,209,765 - 14271 mRNA_5903 0.64 0.8
1,209,875 + 14271 mRNA_5903 0.67 1.1
1,209,928 - 14271 mRNA_5903 0.69 0.3
1,209,932 + 14271 mRNA_5903 0.69 0.1
1,210,007 - 14271 mRNA_5903 0.71 1.6
1,210,026 + 14271 mRNA_5903 0.72 -1.0
1,210,047 - 14271 mRNA_5903 0.73 -0.4
1,210,133 + 14271 mRNA_5903 0.76 0.1
1,210,167 - 14271 mRNA_5903 0.77 -0.2
1,210,203 - 14271 mRNA_5903 0.78 0.4
1,210,219 - 14271 mRNA_5903 0.78 -0.1
1,210,241 - 14271 mRNA_5903 0.79 3.1
1,210,297 + 14271 mRNA_5903 0.81 -0.1
1,210,304 - 14271 mRNA_5903 0.81 1.4
1,210,322 + 14271 mRNA_5903 0.82 -0.0
1,210,350 - 14271 mRNA_5903 0.83 1.7
1,210,358 - 14271 mRNA_5903 0.83 -0.3
1,210,380 + 14271 mRNA_5903 0.84 0.8
1,210,389 + 14271 mRNA_5903 0.84 0.0
1,210,389 + 14271 mRNA_5903 0.84 0.3
1,210,395 + 14271 mRNA_5903 0.84 -0.5
1,210,396 - 14271 mRNA_5903 0.84 0.6
1,210,399 - 14271 mRNA_5903 0.84 -0.7
1,210,406 - 14271 mRNA_5903 0.85 -0.6
1,210,408 + 14271 mRNA_5903 0.85 -0.6
1,210,416 - 14271 mRNA_5903 0.85 1.1
1,210,435 + 14271 mRNA_5903 0.86 -0.6
1,210,442 - 14271 mRNA_5903 0.86 -0.5
1,210,442 - 14271 mRNA_5903 0.86 0.1
1,210,446 + 14271 mRNA_5903 0.86 -0.4
1,210,447 - 14271 mRNA_5903 0.86 -0.4
1,210,448 + 14271 mRNA_5903 0.86 -0.2
1,210,450 - 14271 mRNA_5903 0.86 -0.4
1,210,457 - 14271 mRNA_5903 0.86 1.9
1,210,457 - 14271 mRNA_5903 0.86 -0.0
1,210,458 + 14271 mRNA_5903 0.86 1.1
1,210,459 + 14271 mRNA_5903 0.86 1.6
1,210,460 + 14271 mRNA_5903 0.86 0.3
1,210,460 + 14271 mRNA_5903 0.86 0.1
1,210,462 - 14271 mRNA_5903 0.86 0.4
1,210,464 - 14271 mRNA_5903 0.86 0.0
1,210,470 + 14271 mRNA_5903 0.87 1.1
1,210,472 - 14271 mRNA_5903 0.87 -0.0
1,210,478 - 14271 mRNA_5903 0.87 0.2
1,210,499 + 14271 mRNA_5903 0.88 1.0
1,210,500 - 14271 mRNA_5903 0.88 -0.3
1,210,509 + 14271 mRNA_5903 0.88 -0.2
1,210,511 + 14271 mRNA_5903 0.88 0.3
1,210,518 - 14271 mRNA_5903 0.88 -0.2
1,210,518 - 14271 mRNA_5903 0.88 -0.8
1,210,536 + 14271 mRNA_5903 0.89 -0.2
1,210,590 - 0.6
1,210,598 + 0.2
1,210,599 + 0.0
1,210,614 - -0.4
1,210,617 + 1.0
1,210,618 + 0.3
1,210,620 - 1.0
1,210,653 - 1.2
1,210,654 - 1.2
1,210,656 - 1.4
1,210,659 + 0.4
1,210,659 - -1.5
1,210,660 - 1.3
1,210,660 - 2.5
1,210,660 - -0.0
1,210,668 - 0.1
1,210,673 - -0.8
1,210,673 + 0.0
1,210,673 + 0.3
1,210,676 + -1.4
1,210,679 - -0.0
1,210,680 + -0.5
1,210,680 + 0.7
1,210,683 - -0.7
1,210,687 - 0.7
1,210,690 - 0.4
1,210,690 - 0.1
1,210,697 - 0.8
1,210,709 + 1.0
1,210,723 + 0.1
1,210,726 - -0.3
1,210,743 - -0.5
1,210,758 + -2.0
1,210,771 + -1.5
1,210,791 - -0.4
1,210,792 - -0.2
1,210,797 + 0.6
1,210,799 + 1.3
1,210,833 - -0.6
1,210,852 - 0.1
1,210,858 + 1.6
1,210,867 + -0.3
1,210,873 - -1.1
1,210,878 - -0.7
1,210,880 - -1.1
1,210,880 - -0.6
1,210,880 - 1.5
1,210,884 - 0.5
1,210,885 + 0.2
1,210,892 + 0.6
1,210,895 + -1.5
1,210,897 + 1.2
1,210,901 - -0.7
1,210,904 + 2.2
1,210,909 + 0.4
1,210,909 - 0.1
1,210,910 - -1.8
1,210,917 + -0.7
1,210,917 - -0.4
1,210,918 + -1.2
1,210,918 + -1.1
1,210,934 + -0.7
1,210,935 + -0.8
1,210,937 - -0.2
1,210,941 + 0.4
1,210,946 + 0.4
1,210,963 + -1.0
1,211,030 - 1.7
1,211,039 + -1.1
1,211,081 + -1.6
1,211,081 + -1.5
1,211,086 + 0.2
1,211,192 + 0.5
1,211,201 + 1.0
1,211,208 + -0.0
1,211,220 - -0.3
1,211,242 + 14272 mRNA_5904 0.10 0.9
1,211,243 + 14272 mRNA_5904 0.10 1.2
1,211,355 - 14272 mRNA_5904 0.19 -0.4
1,211,368 - 14272 mRNA_5904 0.20 0.3
1,211,378 - 14272 mRNA_5904 0.21 -0.9
1,211,528 - 14272 mRNA_5904 0.33 -0.8
1,211,553 - 14272 mRNA_5904 0.35 0.1