Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5880

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5879: 14247 - KOG2624 Triglyceride lipase-cholesterol esterase, at 1149162 to 1152280 14247 mRNA_5880: 14248 - HMMPfam-Transglycosylase SLT domain-PF01464,SUPERFAMILY--SSF53955, at 1152556 to 1154002 14248 mRNA_5881: 14249 - BLAST related to embryonic protein DC-8 [Ustilago hordei], at 1154519 to 1154935 14249

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,151,635 + 14247 mRNA_5879 0.79 -0.2
1,151,731 + 14247 mRNA_5879 0.82 1.4
1,152,021 + 0.2
1,152,052 + -0.2
1,152,059 + -0.6
1,152,494 + 0.2
1,152,574 - -0.5
1,152,667 + 0.5
1,152,703 + 14248 mRNA_5880 0.10 -0.1
1,152,760 - 14248 mRNA_5880 0.14 -2.6
1,152,906 - 14248 mRNA_5880 0.24 0.6
1,153,025 - 14248 mRNA_5880 0.32 0.8
1,153,049 - 14248 mRNA_5880 0.34 -0.0
1,153,056 + 14248 mRNA_5880 0.35 0.6
1,153,149 - 14248 mRNA_5880 0.41 0.7
1,153,162 - 14248 mRNA_5880 0.42 1.6
1,153,164 + 14248 mRNA_5880 0.42 -2.2
1,153,227 + 14248 mRNA_5880 0.46 -1.2
1,153,323 - 14248 mRNA_5880 0.53 -1.2
1,153,324 - 14248 mRNA_5880 0.53 -0.1
1,153,362 + 14248 mRNA_5880 0.56 -0.0
1,153,599 + 14248 mRNA_5880 0.72 0.4
1,153,783 + 14248 mRNA_5880 0.85 -1.3
1,153,913 + 0.4
1,154,956 - 0.5
1,154,968 + -0.5
1,154,973 - 1.5