Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5873

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5872: 14240 - HMMPfam-Pleckstrin homology domain-PF15404,SMART-Pleckstrin homology domain.-SM00233, at 1131493 to 1135652 14240 mRNA_5873: 14241 - K00761 upp, UPRT uracil phosphoribosyltransferase, at 1136080 to 1137305 14241 mRNA_5874: 14242 - K04536 GNB1 guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, at 1138140 to 1139450 14242

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,135,141 - 14240 mRNA_5872 0.88 -1.1
1,135,310 + -2.5
1,135,316 + -2.2
1,135,432 + 1.6
1,135,731 - -0.3
1,135,840 - 0.0
1,135,863 - 1.5
1,135,881 - 0.9
1,135,893 - -0.0
1,136,040 - -0.5
1,136,040 + -0.6
1,136,203 - 14241 mRNA_5873 0.10 0.7
1,136,204 + 14241 mRNA_5873 0.10 0.6
1,136,910 - 14241 mRNA_5873 0.68 0.2
1,137,353 + -1.9
1,137,497 + 1.1
1,137,823 + -1.5
1,138,065 + 0.4
1,138,244 + -0.4