Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5732

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5731: 14099 - Hypothetical Protein, at 797618 to 798076 14099 mRNA_5732: 14100 - HMMPfam-bZIP transcription factor-PF00170,HMMPfam-Minimal binding motif of Hap4 for binding to Hap2/3/5-PF10297,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,SUPERFAMILY--SSF57959, at 798563 to 800717 14100 mRNA_5733: 14101 - KOG4197 FOG PPR repeat, at 800656 to 803521 14101

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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797,578 - 0.0
797,583 + 1.3
797,718 - 14099 mRNA_5731 0.22 0.7
797,721 + 14099 mRNA_5731 0.22 -0.2
797,727 + 14099 mRNA_5731 0.24 -0.3
797,740 - 14099 mRNA_5731 0.27 -0.8
797,747 + 14099 mRNA_5731 0.28 1.2
797,757 + 14099 mRNA_5731 0.30 0.1
797,991 - 14099 mRNA_5731 0.81 1.0
798,449 + 2.1
798,468 + -0.8
798,470 + -0.2
798,480 + 0.7
798,649 + -0.5
798,935 + 14100 mRNA_5732 0.17 1.3
799,207 - 14100 mRNA_5732 0.30 -1.4
799,380 - 14100 mRNA_5732 0.38 -1.3
799,467 - 14100 mRNA_5732 0.42 -2.4
799,610 + 14100 mRNA_5732 0.49 -1.1
799,769 + 14100 mRNA_5732 0.56 -2.3
800,037 - 14100 mRNA_5732 0.68 -1.9
800,229 - 14100 mRNA_5732 0.77 -0.4
800,358 + 14100 mRNA_5732 0.83 -1.4
800,946 - 14101 mRNA_5733 0.10 0.3