Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5702

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5700: 14068 - KOG0143 Iron/ascorbate family oxidoreductases, at 719283 to 720938 14068 mRNA_5701: 14069 - K13120 FAM32A protein FAM32A, at 721042 to 721632 14069 mRNA_5702: 14070 - K09478 ACADSB short/branched chain acyl-CoA dehydrogenase, at 721912 to 723848 14070 mRNA_5703: 14071 - KOG1289 Amino acid transporters, at 724681 to 726988 14071

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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720,940 - -0.3
721,397 + 14069 mRNA_5701 0.60 -0.2
721,548 - 14069 mRNA_5701 0.86 -2.0
721,557 + 14069 mRNA_5701 0.87 -0.7
721,686 + -1.5
721,686 - -1.0
721,689 + 0.2
721,693 + -0.2
721,699 + 0.4
721,704 + 0.7
721,711 + 0.8
721,712 + 0.0
721,714 - -0.1
721,816 - -0.6
721,816 + -0.3
721,818 + -1.4
721,826 - -0.8
721,836 - -1.7
721,836 - 1.7
721,842 + -0.4
721,844 + 0.3
721,856 - 0.5
721,861 + -0.5
721,993 - -1.5
721,994 + -2.4
722,144 - 14070 mRNA_5702 0.12 -2.3
722,155 + 14070 mRNA_5702 0.13 -3.3
722,839 - 14070 mRNA_5702 0.48 -1.5
722,849 + 14070 mRNA_5702 0.48 -2.9
723,014 + 14070 mRNA_5702 0.57 -1.6
723,355 + 14070 mRNA_5702 0.74 -2.4
723,872 - -1.3
724,175 - -0.3
724,196 + 0.3
724,307 - -1.4
724,316 - -1.4
724,325 - 0.0
724,329 - -1.5
724,339 + 0.6
724,352 + -0.5
724,370 + 1.5
724,447 + -0.2
724,455 - 0.0
724,479 + -0.8
724,588 + 0.9
724,629 - 0.8
724,634 - -0.9
724,635 + -0.5
724,640 - -0.5
724,641 + -0.7
724,642 + 1.2
724,646 + 0.3
724,646 + 0.1
724,776 - 1.1
724,778 - -0.5
724,780 - -0.8
724,797 - -0.1