Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5676

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5675: 14043 - Hypothetical Protein, at 667315 to 670414 14043 mRNA_5676: 14044 - BLAST putative protein 27 [Rhizopogon vesiculosus], at 670458 to 672345 14044 mRNA_5677: 14045 - K15901 CGI121, TPRKB EKC/KEOPS complex subunit CGI121/TPRKB, at 672495 to 673304 14045

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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669,493 - 14043 mRNA_5675 0.70 0.6
669,555 + 14043 mRNA_5675 0.72 0.2
669,728 + 14043 mRNA_5675 0.78 -0.1
669,883 + 14043 mRNA_5675 0.83 0.4
669,924 + 14043 mRNA_5675 0.84 -0.6
670,175 - 0.8
670,178 + -0.3
670,202 - -1.5
670,238 + -0.5
670,406 - -0.7
670,411 + 0.1
670,424 - -1.6
670,699 + 14044 mRNA_5676 0.13 -0.1
670,702 + 14044 mRNA_5676 0.13 0.8
670,876 - 14044 mRNA_5676 0.22 0.2
672,163 + 2.7
672,184 + 0.4
672,452 + -1.8
672,470 - -0.1
672,497 + 0.2
672,594 - 14045 mRNA_5677 0.12 0.4
672,594 - 14045 mRNA_5677 0.12 -0.1
672,631 + 14045 mRNA_5677 0.17 0.0
672,735 - 14045 mRNA_5677 0.30 0.6
672,751 - 14045 mRNA_5677 0.32 -1.1
672,887 + 14045 mRNA_5677 0.48 0.1
672,891 - 14045 mRNA_5677 0.49 -0.2
672,896 + 14045 mRNA_5677 0.50 2.1
672,903 - 14045 mRNA_5677 0.50 -1.0
672,910 + 14045 mRNA_5677 0.51 -0.1
673,040 + 14045 mRNA_5677 0.67 -0.9
673,049 - 14045 mRNA_5677 0.68 0.5
673,050 + 14045 mRNA_5677 0.69 -0.9
673,051 - 14045 mRNA_5677 0.69 1.5
673,072 - 14045 mRNA_5677 0.71 -2.0