Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5655

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5654: 14022 - K01637 E4.1.3.1, aceA isocitrate lyase, at 605186 to 607588 14022 mRNA_5655: 14023 - K01115 PLD1_2 phospholipase D1/2, at 607805 to 615263 14023 mRNA_5656: 14024 - HMMPfam-Universal stress protein family-PF00582,PRINTS-Universal stress protein signature-PR01438,SUPERFAMILY--SSF52402, at 615931 to 617472 14024

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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606,899 - 14022 mRNA_5654 0.71 -2.8
607,001 - 14022 mRNA_5654 0.76 -3.6
607,063 + 14022 mRNA_5654 0.78 -3.5
607,108 - 14022 mRNA_5654 0.80 -3.3
607,157 + 14022 mRNA_5654 0.82 -1.9
607,184 - 14022 mRNA_5654 0.83 -5.4
607,186 + 14022 mRNA_5654 0.83 -2.9
607,205 + 14022 mRNA_5654 0.84 -4.4
607,206 + 14022 mRNA_5654 0.84 -1.9
607,207 - 14022 mRNA_5654 0.84 -1.6
607,208 - 14022 mRNA_5654 0.84 -2.1
607,209 + 14022 mRNA_5654 0.84 -2.3
607,352 + 0.2
607,518 - -4.7
607,643 - -1.2
607,646 + -2.0
607,648 - -1.1
607,653 + -1.2
607,656 + -1.4
607,659 + -1.4
607,659 + -2.7
607,661 - -1.2
607,668 - -1.6
607,668 - -1.2
607,669 - -0.6
607,671 + -0.9
607,673 - -1.4
607,680 + -1.2
607,681 + -2.2
607,684 - 0.5
607,690 + -0.2
607,709 + -0.1
607,760 + -0.7
607,763 + -0.6
607,769 + -1.1
607,770 - -0.7
607,786 + 0.3
607,818 - -1.6
607,821 + -1.3
607,827 - -2.0
607,853 - -1.7
608,735 + 14023 mRNA_5655 0.12 -2.5
608,798 - 14023 mRNA_5655 0.13 -0.3
609,616 - 14023 mRNA_5655 0.24 0.5
609,788 - 14023 mRNA_5655 0.27 -0.4
609,901 + 14023 mRNA_5655 0.28 -0.5
610,009 + 14023 mRNA_5655 0.30 -0.5
610,221 + 14023 mRNA_5655 0.32 1.4
610,322 + 14023 mRNA_5655 0.34 -2.6
610,874 + 14023 mRNA_5655 0.41 -2.3
610,946 - 14023 mRNA_5655 0.42 -2.5
611,927 + 14023 mRNA_5655 0.55 -0.3
612,091 - 14023 mRNA_5655 0.57 1.3
612,674 + 14023 mRNA_5655 0.65 0.2
612,851 + 14023 mRNA_5655 0.68 -0.3
613,163 - 14023 mRNA_5655 0.72 0.4
613,979 - 14023 mRNA_5655 0.83 0.6
613,985 - 14023 mRNA_5655 0.83 1.3
614,151 - 14023 mRNA_5655 0.85 -2.4
614,446 - 14023 mRNA_5655 0.89 0.1
614,556 - 0.8
614,585 - -0.2
614,758 - -1.9
615,316 + 1.0
615,343 + -0.4
615,347 + 0.3
615,464 - -1.0
615,511 - 0.3
615,514 + -0.9
615,516 + 0.5
615,529 - -2.9
615,653 - -0.4