Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5636

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5635: 14003 - HMMPfam-Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y-PF15159, at 564046 to 564667 14003 mRNA_5636: 14004 - BLAST Regulator of phospholipase D SRF1 [Hypsizygus marmoreus], at 564941 to 566584 14004 mRNA_5637: 14005 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 566875 to 570624 14005

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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563,984 - 1.9
564,021 - 0.5
564,409 - 14003 mRNA_5635 0.58 0.3
564,705 + -0.2
564,715 - 0.2
564,716 + 0.9
564,720 + -0.1
564,835 - 1.8
564,870 - 0.2
564,987 - -0.3
565,166 + 14004 mRNA_5636 0.14 -0.7
565,328 - 14004 mRNA_5636 0.24 0.8
565,865 - 14004 mRNA_5636 0.56 -1.4
565,890 + 14004 mRNA_5636 0.58 -2.0
566,035 - 14004 mRNA_5636 0.67 -1.5
566,039 + 14004 mRNA_5636 0.67 -0.3
566,040 + 14004 mRNA_5636 0.67 -1.2
566,196 + 14004 mRNA_5636 0.76 -1.2
566,197 + 14004 mRNA_5636 0.76 -0.4
566,354 - 14004 mRNA_5636 0.86 -0.7
566,364 + 14004 mRNA_5636 0.87 -1.1
566,483 - -1.2
566,500 + -3.1
566,662 + 0.5
566,673 + 2.0
566,789 - -0.0
566,822 - 1.0
567,038 - 1.4
567,375 + 14005 mRNA_5637 0.13 -1.3