Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5608

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5608: 13976 - K03018 RPC1, POLR3A DNA-directed RNA polymerase III subunit RPC1, at 494885 to 501857 13976 mRNA_5609: 13977 - HMMPfam-Leucine Rich Repeat-PF00560,ProSiteProfiles-Leucine-rich repeat profile.-PS51450,SMART-Leucine-rich repeats, typical (most populated) subfamily-SM00369,SUPERFAMILY--SSF52058, at 502227 to 504581 13977

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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493,908 - 1.3
493,924 + -0.5
494,365 + -1.0
494,552 + 0.9
494,656 + 1.0
494,803 + 0.8
494,809 - -1.0
494,826 + -2.1
495,280 + -2.2
500,717 + 13976 mRNA_5608 0.84 0.5
500,858 + 13976 mRNA_5608 0.86 1.9
501,868 - 1.2
502,016 - 1.7
502,129 - 0.8
502,143 - -0.4
502,152 - -1.5
502,153 - 0.9
502,154 + 0.3
502,157 - 0.3
502,293 - -0.9
502,452 - 1.5
502,473 - 13977 mRNA_5609 0.10 0.3
502,477 + 13977 mRNA_5609 0.11 -0.1
502,477 + 13977 mRNA_5609 0.11 0.1
502,748 + 13977 mRNA_5609 0.22 -0.2