Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5551

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5550: 13918 - K09424 REB1 Myb-like DNA-binding protein REB1, at 353365 to 355997 13918 mRNA_5551: 13919 - ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,SUPERFAMILY--SSF56112, at 356341 to 358990 13919 mRNA_5552: 13920 - K03360 GRR1 F-box and leucine-rich repeat protein GRR1, at 359863 to 362993 13920

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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356,186 + 0.1
356,263 - 2.3
356,278 - -0.1
356,638 + 13919 mRNA_5551 0.11 2.7
356,649 - 13919 mRNA_5551 0.12 -0.2
356,914 + 13919 mRNA_5551 0.22 0.0
357,061 - 13919 mRNA_5551 0.27 0.4
357,191 + 13919 mRNA_5551 0.32 -0.4
357,220 - 13919 mRNA_5551 0.33 0.6
357,499 + 13919 mRNA_5551 0.44 -0.3
357,575 + 13919 mRNA_5551 0.47 1.2
357,740 - 13919 mRNA_5551 0.53 0.5
358,216 + 13919 mRNA_5551 0.71 0.5
358,223 - 13919 mRNA_5551 0.71 0.7
358,902 + -0.1
358,948 + 0.6
359,030 - -0.7
359,039 - 0.3
359,049 - 1.8
359,056 - 0.4
359,069 + -1.4
359,121 - 0.2
359,207 - 0.3
359,213 - -1.1
359,223 - -0.1
359,332 - -0.3
359,459 - 0.8
359,479 + -0.1
359,609 + -0.9
359,627 + -1.9
359,627 - -1.6
359,771 + -1.6