Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5549

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5548: 13916 - KOG4006 Anti-proliferation factor BTG1/TOB, at 346631 to 348391 13916 mRNA_5549: 13917 - K00027 ME2, sfcA, maeA malate dehydrogenase (oxaloacetate-decarboxylating), at 349196 to 351953 13917

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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348,259 + 0.3
348,390 + 1.6
348,436 + 0.3
348,561 - -2.2
348,592 + 0.3
348,705 - 2.2
348,713 - -2.4
348,723 + 2.0
348,727 + -0.0
348,727 + -0.1
348,730 + 1.9
348,730 - 0.7
348,730 + 0.3
348,733 - 1.1
348,735 - 1.1
348,739 - 0.1
348,875 - 2.3
348,877 - 0.7
348,896 - -0.3
349,034 - 2.1
349,045 - 0.4
349,148 + 0.9
349,164 + -0.3
349,171 + 0.9
349,177 - -1.6
349,186 + 1.2
349,309 - -0.9
349,320 + 1.4
349,468 + 0.4
349,749 - 13917 mRNA_5549 0.20 -1.1
349,756 + 13917 mRNA_5549 0.20 -0.3
349,769 - 13917 mRNA_5549 0.21 0.2
350,057 - 13917 mRNA_5549 0.31 1.0
350,190 - 13917 mRNA_5549 0.36 0.4
350,616 + 13917 mRNA_5549 0.51 0.8
350,805 - 13917 mRNA_5549 0.58 -0.4
351,065 - 13917 mRNA_5549 0.68 -0.5
351,118 - 13917 mRNA_5549 0.70 0.6
351,261 + 13917 mRNA_5549 0.75 -0.9
351,346 + 13917 mRNA_5549 0.78 0.2
352,155 + -0.9
352,410 + 0.9
352,428 + -0.8
352,566 + -0.6
352,749 + 1.7
352,864 + -0.6
352,922 - 0.7
352,950 + -0.5