Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5522

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5521: 13889 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 291900 to 293030 13889 mRNA_5522: 13890 - ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145, at 293520 to 294673 13890 mRNA_5523: 13891 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF57850, at 295158 to 296227 13891

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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292,590 + 13889 mRNA_5521 0.61 0.4
292,592 - 13889 mRNA_5521 0.61 -0.4
292,629 - 13889 mRNA_5521 0.64 -0.1
292,647 + 13889 mRNA_5521 0.66 -1.3
292,702 + 13889 mRNA_5521 0.71 -0.4
292,708 - 13889 mRNA_5521 0.71 -1.2
292,756 - 13889 mRNA_5521 0.76 0.1
292,767 + 13889 mRNA_5521 0.77 -0.6
292,898 + 13889 mRNA_5521 0.88 -0.1
292,924 - 0.6
292,935 + -0.4
293,058 + 0.0
293,100 + -0.7
293,190 - 0.1
293,201 + -1.0
293,216 - -0.5
293,222 - -0.3
293,390 + -0.9
293,444 - 0.5
293,507 - 0.8
293,908 + 13890 mRNA_5522 0.34 -1.8
293,911 + 13890 mRNA_5522 0.34 -0.1
294,001 - 13890 mRNA_5522 0.42 0.2
294,096 - 13890 mRNA_5522 0.50 0.2
294,175 + 13890 mRNA_5522 0.57 0.4
294,199 - 13890 mRNA_5522 0.59 0.1
294,223 - 13890 mRNA_5522 0.61 -0.1
294,226 + 13890 mRNA_5522 0.61 0.4
294,348 + 13890 mRNA_5522 0.72 0.0
294,438 + 13890 mRNA_5522 0.80 -0.7
294,482 + 13890 mRNA_5522 0.83 0.1
294,488 - 13890 mRNA_5522 0.84 -1.0
294,499 - 13890 mRNA_5522 0.85 0.0
294,505 + 13890 mRNA_5522 0.85 -0.7
294,512 + 13890 mRNA_5522 0.86 -0.5
294,616 + -1.4
294,637 - 0.4
294,654 + 1.8
294,672 - 1.3
294,787 - -0.8
294,797 - 0.6
294,803 - 0.3
294,809 - 0.6
294,813 + -0.2
294,882 + 0.8
294,985 + 1.1
294,985 + -0.4
294,985 + 0.8
294,985 + 0.4
294,995 + -1.1
295,044 - -0.1
295,104 + 1.0
295,220 - -0.2
295,221 - -0.3
295,221 + -0.7
295,529 - 13891 mRNA_5523 0.35 1.8
295,577 + 13891 mRNA_5523 0.39 0.6
295,582 - 13891 mRNA_5523 0.40 1.2