Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5520

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5519: 13887 - HMMPfam-TRAF-type zinc finger-PF02176,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145, at 288669 to 289832 13887 mRNA_5520: 13888 - KOG0297 TNF receptor-associated factor, at 290297 to 291417 13888 mRNA_5521: 13889 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 291900 to 293030 13889

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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289,539 - 13887 mRNA_5519 0.75 0.4
289,801 - -0.5
289,816 - -0.3
289,953 - 0.3
290,007 - 0.4
290,092 - -0.7
290,102 + 1.3
290,103 - -0.5
290,275 - -1.2
290,661 - 13888 mRNA_5520 0.32 1.0
290,661 - 13888 mRNA_5520 0.32 1.1
290,667 + 13888 mRNA_5520 0.33 -4.0
290,673 - 13888 mRNA_5520 0.34 0.1
290,687 + 13888 mRNA_5520 0.35 0.1
290,687 - 13888 mRNA_5520 0.35 -2.9
290,713 + 13888 mRNA_5520 0.37 -0.0
290,744 + 13888 mRNA_5520 0.40 0.4
290,799 - 13888 mRNA_5520 0.45 0.2
290,859 - 13888 mRNA_5520 0.50 -1.4
291,103 - 13888 mRNA_5520 0.72 -0.3
291,105 + 13888 mRNA_5520 0.72 -0.3
291,151 - 13888 mRNA_5520 0.76 0.3
291,153 - 13888 mRNA_5520 0.76 0.1
291,392 - 1.3
291,473 + 0.9
291,540 + -1.3
291,568 + -0.6
291,675 - 0.6
291,856 - 0.2
291,857 + -1.6
291,862 + 0.5
291,891 - 0.1
292,011 - 0.5
292,012 + 0.5
292,015 - 13889 mRNA_5521 0.10 -1.4
292,019 + 13889 mRNA_5521 0.11 0.5
292,021 + 13889 mRNA_5521 0.11 1.4
292,021 + 13889 mRNA_5521 0.11 0.3
292,173 - 13889 mRNA_5521 0.24 0.3
292,173 - 13889 mRNA_5521 0.24 0.5
292,188 - 13889 mRNA_5521 0.25 1.7
292,192 + 13889 mRNA_5521 0.26 0.7
292,324 - 13889 mRNA_5521 0.37 1.0