Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5513

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5512: 13880 - HMMPfam-PB1 domain-PF00564,HMMPfam-CBS domain-PF00571,ProSiteProfiles-CBS domain profile.-PS51371,SMART-Domain in cystathionine beta-synthase and other proteins.-SM00116,SUPERFAMILY--SSF54277,SUPERFAMILY--SSF54631, at 268970 to 271571 13880 mRNA_5513: 13881 - KOG4178 Soluble epoxide hydrolase, at 272103 to 273154 13881 mRNA_5514: 13882 - K03031 PSMD8, RPN12 26S proteasome regulatory subunit N12, at 273277 to 274802 13882

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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271,630 + -0.2
271,959 + -1.3
271,987 - -0.3
272,379 + 13881 mRNA_5513 0.26 0.1
272,402 - 13881 mRNA_5513 0.28 1.3
272,447 - 13881 mRNA_5513 0.33 -0.1
272,564 - 13881 mRNA_5513 0.44 -0.3
272,567 - 13881 mRNA_5513 0.44 0.6
272,693 + 13881 mRNA_5513 0.56 0.6
272,788 - 13881 mRNA_5513 0.65 2.3
272,997 + 13881 mRNA_5513 0.85 0.8
273,005 - 13881 mRNA_5513 0.86 0.1
273,046 - 13881 mRNA_5513 0.90 0.6
273,117 + 1.7