Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5487

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5486: 13854 - K15695 RNF103, KF1 E3 ubiquitin-protein ligase RNF103, at 211057 to 213286 13854 mRNA_5487: 13855 - HMMPfam-Protein kinase domain-PF00069,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 213824 to 214622 13855 mRNA_5488: 13856 - K01078 E3.1.3.2 acid phosphatase, at 214884 to 216932 13856

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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213,057 + 13854 mRNA_5486 0.90 -0.6
213,510 - 0.6
213,641 + 3.7
213,658 - -0.0
214,062 - 13855 mRNA_5487 0.30 0.7
214,102 + 13855 mRNA_5487 0.35 -0.9
214,135 + 13855 mRNA_5487 0.39 -0.1
214,201 + 13855 mRNA_5487 0.47 -0.8
214,516 - 13855 mRNA_5487 0.87 0.6
214,836 - 0.5
214,939 + -0.2
215,062 + 1.0
215,284 + 13856 mRNA_5488 0.20 0.7
215,408 - 13856 mRNA_5488 0.26 -0.1
215,534 + 13856 mRNA_5488 0.32 -0.5
215,537 - 13856 mRNA_5488 0.32 0.5