Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5476

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5475: 13843 - KOG0084 GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins, at 181752 to 183361 13843 mRNA_5476: 13844 - KOG4719 Nuclear pore complex protein, at 183800 to 188314 13844 mRNA_5477: 13845 - K20179 VPS11, PEP5 vacuolar protein sorting-associated protein 11, at 188584 to 192714 13845

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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182,802 - 13843 mRNA_5475 0.65 -1.5
182,830 - 13843 mRNA_5475 0.67 -1.2
182,995 + 13843 mRNA_5475 0.77 -0.8
183,144 - 13843 mRNA_5475 0.86 -0.5
183,252 - -0.0
183,391 + -0.3
183,405 - 0.5
183,427 - -0.1
183,565 - -0.0
184,182 + -2.4
184,182 + 0.7
184,300 + 13844 mRNA_5476 0.11 0.7
184,480 + 13844 mRNA_5476 0.15 1.5
184,578 - 13844 mRNA_5476 0.17 0.1
184,578 - 13844 mRNA_5476 0.17 -0.1
186,691 - 13844 mRNA_5476 0.64 0.5
187,006 + 13844 mRNA_5476 0.71 -0.7
188,366 + 1.2
188,373 + 0.7
188,390 - -0.2
188,512 - -1.3
188,521 + -1.2
188,794 - 0.7