Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5428

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5427: 13795 - Hypothetical Protein, at 75255 to 76663 13795 mRNA_5428: 13796 - KOG0157 Cytochrome P450 CYP4/CYP19/CYP26 subfamilies, at 77473 to 79440 13796 mRNA_5429: 13797 - K01067 E3.1.2.1, ACH1 acetyl-CoA hydrolase, at 79557 to 82396 13797

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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76,578 - -1.3
76,596 + -0.3
76,811 + 0.1
76,868 + 2.7
77,130 + -0.6
77,150 + 0.6
77,154 + 0.1
77,162 + 1.0
77,299 - 0.0
77,313 + 1.8
77,316 - -0.9
77,321 - -1.0
77,343 + -0.2
77,454 - 0.6
77,483 + 0.6
77,512 + -1.0
77,776 - 13796 mRNA_5428 0.15 0.3
77,784 + 13796 mRNA_5428 0.16 -1.7
78,065 - 13796 mRNA_5428 0.30 2.1
78,066 + 13796 mRNA_5428 0.30 1.1
78,291 - 13796 mRNA_5428 0.42 -0.0
78,300 - 13796 mRNA_5428 0.42 -0.0
78,491 - 13796 mRNA_5428 0.52 0.0
78,502 - 13796 mRNA_5428 0.52 -0.7
78,563 - 13796 mRNA_5428 0.55 0.0
78,602 + 13796 mRNA_5428 0.57 0.5
78,907 - 13796 mRNA_5428 0.73 -0.2
79,226 + 13796 mRNA_5428 0.89 -0.4
79,295 - -0.8
79,319 - 2.2
79,492 + -1.4
79,780 - 0.4
79,781 + 0.6
79,869 + 13797 mRNA_5429 0.11 -0.0
79,869 + 13797 mRNA_5429 0.11 0.4
79,877 - 13797 mRNA_5429 0.11 -1.6
79,889 + 13797 mRNA_5429 0.12 0.5
79,920 + 13797 mRNA_5429 0.13 -0.9
79,975 + 13797 mRNA_5429 0.15 1.7
80,070 + 13797 mRNA_5429 0.18 -1.2
80,275 - 13797 mRNA_5429 0.25 0.6