Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5418

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5417: 13785 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 53998 to 56725 13785 mRNA_5418: 13786 - K01502 E3.5.5.7 aliphatic nitrilase, at 56919 to 58432 13786 mRNA_5419: 13787 - Interpro Cut8, nuclear proteasome tether protein, at 58738 to 60106 13787

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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56,079 + 13785 mRNA_5417 0.76 -0.8
56,363 + 13785 mRNA_5417 0.87 -0.6
56,368 + 13785 mRNA_5417 0.87 1.0
56,398 - 13785 mRNA_5417 0.88 1.4
56,647 + -0.4
56,668 - 1.3
56,684 - 0.7
56,782 - -0.8
56,804 - 1.3
56,813 - 0.5
56,828 - -0.2
56,837 - -1.3
56,852 - -0.2
56,856 + 1.0
56,971 + 0.1
57,071 - 13786 mRNA_5418 0.10 -0.6
57,095 - 13786 mRNA_5418 0.12 1.0
57,114 + 13786 mRNA_5418 0.13 0.2
57,271 + 13786 mRNA_5418 0.23 -0.5
57,380 - 13786 mRNA_5418 0.30 -0.1
57,513 + 13786 mRNA_5418 0.39 0.3
57,518 - 13786 mRNA_5418 0.40 3.0
57,518 - 13786 mRNA_5418 0.40 0.0
57,531 + 13786 mRNA_5418 0.40 0.7
57,531 + 13786 mRNA_5418 0.40 0.8
57,670 - 13786 mRNA_5418 0.50 0.0
57,684 - 13786 mRNA_5418 0.51 -0.0
57,702 + 13786 mRNA_5418 0.52 -0.9
57,776 + 13786 mRNA_5418 0.57 0.9
57,778 - 13786 mRNA_5418 0.57 -1.4
57,948 - 13786 mRNA_5418 0.68 -1.5
58,060 - 13786 mRNA_5418 0.75 -0.1
58,079 - 13786 mRNA_5418 0.77 0.5
58,138 - 13786 mRNA_5418 0.81 -1.5
58,166 - 13786 mRNA_5418 0.82 1.3
58,212 - 13786 mRNA_5418 0.85 -0.2
58,214 + 13786 mRNA_5418 0.86 2.8
58,395 + -0.6
58,519 - 0.1
58,682 + 1.6
58,816 + 0.2
59,111 + 13787 mRNA_5419 0.27 0.7
59,124 + 13787 mRNA_5419 0.28 -0.3
59,195 - 13787 mRNA_5419 0.33 0.9
59,258 - 13787 mRNA_5419 0.38 0.8
59,418 + 13787 mRNA_5419 0.50 0.2
59,424 + 13787 mRNA_5419 0.50 -0.2