Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5405

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5404: 13772 - Hypothetical Protein, at 22508 to 23850 13772 mRNA_5405: 13773 - K08869 ADCK, ABC1 aarF domain-containing kinase, at 23970 to 26723 13773 mRNA_5406: 13774 - KOG2742 Predicted oxidoreductase, at 26869 to 28382 13774

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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23,068 - 13772 mRNA_5404 0.42 1.6
23,070 + 13772 mRNA_5404 0.42 2.4
23,070 - 13772 mRNA_5404 0.42 1.6
23,095 + 13772 mRNA_5404 0.44 1.1
23,279 + 13772 mRNA_5404 0.57 1.0
23,283 + 13772 mRNA_5404 0.58 -0.4
23,330 - 13772 mRNA_5404 0.61 -0.2
23,359 - 13772 mRNA_5404 0.63 -0.5
23,432 - 13772 mRNA_5404 0.69 1.0
23,641 + 13772 mRNA_5404 0.84 0.4
23,774 - 1.3
23,900 - -0.5
23,908 - -0.2
23,929 + -0.3
23,967 + 0.7
24,070 - -1.2
24,078 - -0.5
24,081 + 0.3
24,518 + 13773 mRNA_5405 0.20 -0.1
24,766 - 13773 mRNA_5405 0.29 -0.6
24,827 - 13773 mRNA_5405 0.31 0.1
24,850 - 13773 mRNA_5405 0.32 0.5
25,099 - 13773 mRNA_5405 0.41 0.1
25,373 - 13773 mRNA_5405 0.51 0.4
25,645 + 13773 mRNA_5405 0.61 -0.1
25,667 - 13773 mRNA_5405 0.62 -1.6
25,677 + 13773 mRNA_5405 0.62 0.2
25,846 + 13773 mRNA_5405 0.68 -1.1
25,991 - 13773 mRNA_5405 0.73 -0.5
26,132 + 13773 mRNA_5405 0.79 -2.5
26,186 + 13773 mRNA_5405 0.80 0.5
26,685 - 2.1
26,817 + -0.4
26,857 + -0.9
26,985 - 0.6
26,990 - 0.8
27,099 - 13774 mRNA_5406 0.15 -0.4
27,138 - 13774 mRNA_5406 0.18 -1.5
27,140 - 13774 mRNA_5406 0.18 -1.4
27,155 + 13774 mRNA_5406 0.19 0.9
27,155 + 13774 mRNA_5406 0.19 -0.3
27,174 - 13774 mRNA_5406 0.20 2.3
27,213 + 13774 mRNA_5406 0.23 0.8
27,260 + 13774 mRNA_5406 0.26 -0.1
27,263 + 13774 mRNA_5406 0.26 -2.1
27,529 + 13774 mRNA_5406 0.44 -2.0
27,545 + 13774 mRNA_5406 0.45 -0.7
27,572 + 13774 mRNA_5406 0.46 0.3
27,590 - 13774 mRNA_5406 0.48 -0.7
27,698 + 13774 mRNA_5406 0.55 -0.3
27,704 - 13774 mRNA_5406 0.55 -0.1
27,705 + 13774 mRNA_5406 0.55 0.2
27,721 + 13774 mRNA_5406 0.56 0.1