Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5338

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5337: 13705 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 484904 to 487998 13705 mRNA_5338: 13706 - K00891 E2.7.1.71, aroK, aroL shikimate kinase, at 488482 to 491424 13706 mRNA_5339: 13707 - KOG4771 Nucleolar protein (NOP16) involved in 60S ribosomal subunit biogenesis, at 491578 to 492823 13707

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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487,523 - 13705 mRNA_5337 0.85 1.8
488,100 - 1.8
488,146 + 1.2
488,373 - -0.4
488,393 + -1.2
488,408 + -0.4
488,410 - -0.1
488,520 - -0.2
488,545 - 0.7
488,803 + 13706 mRNA_5338 0.11 -0.1
488,810 - 13706 mRNA_5338 0.11 -1.3
488,810 - 13706 mRNA_5338 0.11 -2.2
488,822 - 13706 mRNA_5338 0.12 -0.2
488,956 - 13706 mRNA_5338 0.16 -2.1
488,991 - 13706 mRNA_5338 0.17 -2.5
488,996 + 13706 mRNA_5338 0.17 -0.1
489,100 + 13706 mRNA_5338 0.21 -2.8
489,545 - 13706 mRNA_5338 0.36 -1.1
489,925 - 13706 mRNA_5338 0.49 -1.9
489,968 - 13706 mRNA_5338 0.50 -1.9
490,131 + 13706 mRNA_5338 0.56 -2.5
490,241 + 13706 mRNA_5338 0.60 -0.7
490,297 + 13706 mRNA_5338 0.62 -0.9
490,508 + 13706 mRNA_5338 0.69 -1.1
490,508 - 13706 mRNA_5338 0.69 -1.5
490,524 + 13706 mRNA_5338 0.69 -0.7
490,564 - 13706 mRNA_5338 0.71 -1.9
490,576 - 13706 mRNA_5338 0.71 -1.6
490,740 - 13706 mRNA_5338 0.77 -2.3
490,925 + 13706 mRNA_5338 0.83 -1.9