Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5280

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5279: 13647 - KOG2231 Predicted E3 ubiquitin ligase, at 344945 to 347664 13647 mRNA_5280: 13648 - KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily, at 348551 to 349893 13648 mRNA_5281: 13649 - KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily, at 350665 to 352490 13649

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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347,729 - -2.4
347,796 + -0.9
347,882 + -0.1
347,904 + -0.0
348,210 - -0.1
348,212 - -0.0
348,312 - -0.5
348,347 + 0.2
348,360 + -0.2
348,384 - -0.4
348,762 + 13648 mRNA_5280 0.16 1.6
348,798 - 13648 mRNA_5280 0.18 -0.1
349,032 - 13648 mRNA_5280 0.36 0.8
349,050 + 13648 mRNA_5280 0.37 0.3
349,356 + 13648 mRNA_5280 0.60 0.6
349,657 + 13648 mRNA_5280 0.82 -1.9
349,764 + -0.5
349,799 - -0.5
349,802 - -1.0
349,802 + -1.2
349,864 + 0.4
350,002 + -1.0
350,007 + 0.7
350,079 - 0.1
350,110 + -2.5
350,118 + 1.4
350,173 - -0.3
350,177 + 0.2
350,264 - 0.7
350,269 + 0.3
350,269 - 0.4
350,275 - 0.6
350,278 + 0.5
350,283 + -1.8
350,290 - -0.3
350,302 + -0.1
350,430 - 2.3
350,474 + -0.1
350,565 - -0.7
350,647 + -0.8
350,650 - 0.3
350,651 + 1.3