Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5275

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5274: 13642 - KOG0032 Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily, at 334553 to 337184 13642 mRNA_5275: 13643 - K06688 UBE2C, UBC11 ubiquitin-conjugating enzyme E2 C, at 337519 to 338338 13643 mRNA_5276: 13644 - Hypothetical Protein, at 339259 to 340241 13644

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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336,769 - 13642 mRNA_5274 0.84 -2.5
336,917 - 13642 mRNA_5274 0.90 -2.0
337,037 + -0.2
337,091 - 0.2
337,101 + -1.9
337,249 + 1.0
337,249 - -1.5
337,252 + 1.0
337,362 + -0.5
337,362 + -1.8
337,365 - 1.3
337,371 - -0.1
337,385 + 0.6
337,496 + -0.4
337,532 + 0.9
337,871 + 13643 mRNA_5275 0.43 -0.3
337,979 - 13643 mRNA_5275 0.56 0.7
338,097 - 13643 mRNA_5275 0.70 1.6
338,106 - 13643 mRNA_5275 0.72 -1.5
338,149 + 13643 mRNA_5275 0.77 0.1
338,243 + 13643 mRNA_5275 0.88 2.3
338,260 + -0.1
338,265 - -0.7
338,294 - -0.0
338,391 + 0.7
338,417 + 0.6
338,552 - -1.0
338,649 + 0.4
338,693 + 0.5
338,709 + -1.9
338,733 - -0.2
338,792 + -0.2
338,795 + -0.6
338,849 + 0.6
338,853 - -0.5
338,946 - 0.5
338,987 - 1.1
338,994 + -1.0
338,998 - -1.3
339,006 + 0.4
339,276 - 0.7
339,293 - -0.7