Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5205

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5205: 13573 - KOG0001 Ubiquitin and ubiquitin-like proteins, at 148303 to 148964 13573 mRNA_5206: 13574 - HMMPfam-Ubiquitin family-PF00240,ProSiteProfiles-Ubiquitin domain profile.-PS50053,SMART-Ubiquitin homologues-SM00213,SUPERFAMILY--SSF54236, at 149878 to 151168 13574

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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147,662 + -0.8
147,890 - 0.2
148,148 - -2.0
148,173 + 0.3
148,176 + -1.1
148,187 + 0.5
148,205 + -0.8
148,213 - 0.2
148,321 - 0.9
148,396 - 13573 mRNA_5205 0.14 1.1
148,487 - 13573 mRNA_5205 0.28 0.3
148,506 + 13573 mRNA_5205 0.31 0.1
148,629 + 13573 mRNA_5205 0.49 1.2
148,738 - 13573 mRNA_5205 0.66 0.4
148,822 + 13573 mRNA_5205 0.78 0.7
148,931 + 2.8
148,961 + 1.8
149,102 - -0.2
149,178 - -0.2
149,279 - 2.1
149,388 + 0.9
149,434 - -1.7
149,455 - 0.7
149,524 + -1.9
149,548 - -0.0
149,606 - 0.8
149,608 + 0.5
149,675 - 0.2
149,699 + 1.3
149,871 + 1.3