Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5128

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5127: 13495 - K07941 ARF6 ADP-ribosylation factor 6, at 1821519 to 1822822 13495 mRNA_5128: 13496 - K08342 ATG4 cysteine protease ATG4, at 1823481 to 1827071 13496 mRNA_5129: 13497 - Hypothetical Protein, at 1827206 to 1828600 13497

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,822,625 - 13495 mRNA_5127 0.85 0.8
1,822,922 - 1.0
1,822,955 + 0.9
1,822,968 + -0.2
1,822,968 + -0.2
1,822,985 - 0.7
1,822,994 + 1.3
1,823,083 - -0.9
1,823,106 + 1.2
1,823,256 + -0.2
1,823,272 + 1.1
1,823,386 - -0.2
1,823,406 - -1.0
1,823,543 + 0.7
1,823,689 + -0.7
1,823,725 + -0.2
1,823,731 + -0.4
1,823,814 + -0.8
1,823,954 + 13496 mRNA_5128 0.13 0.4
1,823,980 + 13496 mRNA_5128 0.14 -0.1
1,824,018 + 13496 mRNA_5128 0.15 -1.1
1,824,115 + 13496 mRNA_5128 0.18 -0.2
1,824,130 - 13496 mRNA_5128 0.18 0.3
1,824,472 - 13496 mRNA_5128 0.28 -1.9
1,824,474 + 13496 mRNA_5128 0.28 -1.8
1,825,118 - 13496 mRNA_5128 0.46 -0.7
1,825,281 + 13496 mRNA_5128 0.50 0.4
1,825,301 + 13496 mRNA_5128 0.51 -0.1
1,825,312 + 13496 mRNA_5128 0.51 0.3
1,825,322 + 13496 mRNA_5128 0.51 -0.1
1,825,407 + 13496 mRNA_5128 0.54 -0.9
1,825,446 - 13496 mRNA_5128 0.55 0.7
1,825,569 - 13496 mRNA_5128 0.58 -0.2
1,825,579 - 13496 mRNA_5128 0.58 -0.2
1,825,837 - 13496 mRNA_5128 0.66 -0.6
1,826,465 + 13496 mRNA_5128 0.83 -0.2
1,827,027 - -1.7
1,827,052 - 0.1
1,827,353 + 13497 mRNA_5129 0.11 -1.0
1,827,491 + 13497 mRNA_5129 0.20 0.6
1,827,639 + 13497 mRNA_5129 0.31 -1.5