Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5112

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5111: 13479 - K19881 BUD7, BCH1 Chs5-Arf1p-binding protein BUD7/BCH1, at 1785372 to 1788381 13479 mRNA_5112: 13480 - KOG0872 Sterol C5 desaturase, at 1789147 to 1790624 13480 mRNA_5113: 13481 - KOG1441 Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter, at 1790851 to 1792363 13481

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,788,260 - 1.4
1,788,277 + 1.3
1,788,281 + 1.4
1,788,368 - -0.4
1,788,387 - -0.1
1,788,407 + 0.1
1,788,423 + 0.6
1,788,551 - -0.4
1,788,562 + -0.1
1,788,562 + -0.3
1,788,563 - 1.1
1,788,564 + 0.0
1,788,567 + -0.3
1,788,568 + -0.4
1,788,584 - 0.6
1,788,585 - 0.0
1,788,586 + 0.2
1,788,597 - -1.1
1,789,029 + -0.3
1,789,036 + 1.0
1,789,167 + 0.3
1,789,174 - 0.5
1,789,196 + 1.0
1,789,228 - -0.5
1,789,449 - 13480 mRNA_5112 0.20 -0.3
1,789,622 + 13480 mRNA_5112 0.32 -0.4
1,789,627 + 13480 mRNA_5112 0.32 -1.0
1,789,732 - 13480 mRNA_5112 0.40 1.2
1,789,749 + 13480 mRNA_5112 0.41 -0.8
1,790,098 - 13480 mRNA_5112 0.64 -1.6
1,790,491 - 0.6
1,790,625 + -2.4
1,790,633 - 0.2
1,790,798 - 1.0
1,790,924 + 1.8
1,790,971 + 0.2
1,790,978 + -1.7
1,791,063 - 13481 mRNA_5113 0.14 1.0
1,791,088 - 13481 mRNA_5113 0.16 -1.4
1,791,349 - 13481 mRNA_5113 0.33 -0.6
1,791,367 - 13481 mRNA_5113 0.34 -1.5
1,791,389 + 13481 mRNA_5113 0.36 0.0