Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4939

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4938: 13306 - HMMPfam-Protein of unknown function (DUF1749)-PF08538,SUPERFAMILY--SSF53474, at 1364242 to 1365196 13306 mRNA_4939: 13307 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 1365348 to 1366647 13307 mRNA_4940: 13308 - K06693 PSMD9 26S proteasome non-ATPase regulatory subunit 9, at 1367349 to 1367987 13308

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,364,390 + 13306 mRNA_4938 0.15 -1.2
1,364,676 + 13306 mRNA_4938 0.45 -0.1
1,364,680 - 13306 mRNA_4938 0.46 0.2
1,364,839 + 13306 mRNA_4938 0.63 1.0
1,365,091 + 13306 mRNA_4938 0.89 -0.2
1,365,100 - 13306 mRNA_4938 0.90 -0.4
1,365,115 + -0.4
1,365,161 + -3.2
1,365,273 - -0.1
1,365,385 - 0.5
1,365,394 + 1.0
1,365,549 + 13307 mRNA_4939 0.15 -0.1
1,365,831 + 13307 mRNA_4939 0.37 1.7
1,365,882 - 13307 mRNA_4939 0.41 0.0
1,365,975 - 13307 mRNA_4939 0.48 0.2
1,366,128 - 13307 mRNA_4939 0.60 1.0
1,366,152 - 13307 mRNA_4939 0.62 -0.5
1,366,271 - 13307 mRNA_4939 0.71 1.2
1,366,283 + 13307 mRNA_4939 0.72 -0.6
1,366,399 - 13307 mRNA_4939 0.81 1.2
1,366,547 + 1.2
1,366,566 + -0.7
1,366,575 + -0.1
1,366,577 - -0.7
1,366,609 + -0.2
1,366,682 - -0.3
1,366,683 + -0.5
1,366,687 + 0.9
1,366,701 + -0.2
1,366,715 + 0.5
1,366,716 + -0.0
1,366,719 - 2.0
1,366,761 - -0.2
1,366,762 + -0.2
1,366,781 + -0.1
1,366,785 - -1.9
1,366,910 + 0.2
1,366,940 - 0.5
1,367,041 - -0.8
1,367,056 - -0.2
1,367,480 + 13308 mRNA_4940 0.21 -0.5
1,367,585 - 13308 mRNA_4940 0.37 0.0