Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4888

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4887: 13255 - K11365 SGF73 SAGA-associated factor 73, at 1222700 to 1223919 13255 mRNA_4888: 13256 - K20044 PICALM phosphatidylinositol-binding clathrin assembly protein, at 1224614 to 1227335 13256 mRNA_4889: 13257 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1227423 to 1230111 13257

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,223,732 + 13255 mRNA_4887 0.85 0.6
1,224,167 + 0.1
1,224,168 - -0.3
1,224,169 - 0.4
1,224,178 - -0.0
1,224,188 - 0.2
1,224,192 + 0.3
1,224,194 - 0.1
1,224,201 + -0.3
1,224,201 + 0.9
1,224,202 - -0.1
1,224,203 - 0.8
1,224,203 - -0.2
1,224,325 + -0.1
1,224,329 + -0.2
1,224,340 + 0.1
1,224,385 + 0.5
1,224,464 - -0.4
1,224,478 + 0.5
1,224,480 + -1.3
1,224,481 - -0.9
1,224,492 + 1.2
1,224,923 - 13256 mRNA_4888 0.11 -2.0
1,224,933 + 13256 mRNA_4888 0.12 0.3
1,224,943 - 13256 mRNA_4888 0.12 0.7
1,225,082 - 13256 mRNA_4888 0.17 0.3
1,225,491 - 13256 mRNA_4888 0.32 -0.1
1,225,644 - 13256 mRNA_4888 0.38 -0.6
1,225,943 + 13256 mRNA_4888 0.49 -0.3
1,225,957 - 13256 mRNA_4888 0.49 -0.8
1,225,969 + 13256 mRNA_4888 0.50 0.9
1,226,071 + 13256 mRNA_4888 0.54 0.9
1,226,073 - 13256 mRNA_4888 0.54 -1.0
1,226,252 + 13256 mRNA_4888 0.60 -0.4
1,226,433 - 13256 mRNA_4888 0.67 1.0
1,226,763 - 13256 mRNA_4888 0.79 1.3
1,227,086 - 0.2
1,227,355 + 0.0
1,227,365 + -0.7
1,227,538 - -0.6
1,227,633 + 0.4
1,227,649 - -3.0
1,227,660 + -0.9
1,227,671 + -2.0
1,227,824 + 13257 mRNA_4889 0.15 -0.6
1,227,830 - 13257 mRNA_4889 0.15 0.9
1,227,839 - 13257 mRNA_4889 0.15 0.3
1,228,231 + 13257 mRNA_4889 0.30 -1.0