Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4879

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4878: 13246 - K04348 PPP3C, CNA serine/threonine-protein phosphatase 2B catalytic subunit, at 1204764 to 1207810 13246 mRNA_4879: 13247 - KOG1259 Nischarin, modulator of integrin alpha5 subunit action, at 1208439 to 1211006 13247 mRNA_4880: 13248 - K17795 TIM17 mitochondrial import inner membrane translocase subunit TIM17, at 1211374 to 1212342 13248

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,207,440 + 13246 mRNA_4878 0.88 4.6
1,207,448 - 13246 mRNA_4878 0.88 3.5
1,207,595 - 3.4
1,207,604 - 5.2
1,207,622 + 3.9
1,207,733 - 4.3
1,207,738 + 4.5
1,207,744 - 3.9
1,207,746 - 3.3
1,207,752 + 4.3
1,207,754 + 3.8
1,207,755 + 4.1
1,207,755 + 2.6
1,207,772 + 5.0
1,207,881 + 0.0
1,207,884 - 1.0
1,207,892 - 0.5
1,207,894 - 0.0
1,207,902 - 1.0
1,207,904 + 0.2
1,207,907 + 3.3
1,207,910 - 1.1
1,207,916 - 0.9
1,207,917 + 1.7
1,207,917 + 1.0
1,207,918 - -2.7
1,207,920 - 0.6
1,207,920 - 0.1
1,207,920 - 1.2
1,207,924 - 1.7
1,207,925 + 0.2
1,208,046 - 1.4
1,208,057 - -0.2
1,208,201 + -1.1
1,208,201 - -0.1
1,208,204 + -0.1
1,208,217 + -1.6
1,208,341 + -0.7
1,208,342 - 0.4
1,208,351 - 1.1
1,208,468 + 1.6
1,208,473 + 3.5
1,208,476 + 2.1
1,208,488 + 3.2
1,208,488 - -0.0
1,208,626 + -1.1
1,208,796 - 13247 mRNA_4879 0.14 -0.2
1,209,074 - 13247 mRNA_4879 0.25 -0.1
1,209,094 - 13247 mRNA_4879 0.26 -0.3
1,209,492 - 13247 mRNA_4879 0.41 0.5
1,210,418 - 13247 mRNA_4879 0.77 -3.5
1,211,029 + 0.9
1,211,032 - 0.6
1,211,167 - 0.2