Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4793

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4793: 13161 - HMMPfam-Peroxidase-PF00141,PRINTS-Haem peroxidase superfamily signature-PR00458,PRINTS-Plant ascorbate peroxidase signature-PR00459,ProSitePatterns-Peroxidases proximal heme-ligand signature.-PS00435,ProSitePatterns-Peroxidases active site signature.-PS00436,ProSiteProfiles-Plant heme peroxidase family profile.-PS50873,SUPERFAMILY--SSF48113, at 1025868 to 1027318 13161 mRNA_4794: 13162 - Hypothetical Protein, at 1027671 to 1028225 13162

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,025,119 - 1.8
1,025,587 - 1.2
1,025,587 - 0.2
1,025,595 - 0.2
1,025,598 - 1.8
1,025,604 + -0.1
1,025,605 + 0.8
1,025,606 - -0.2
1,025,607 + -2.7
1,025,633 - -0.6
1,025,728 + 0.2
1,025,741 + -2.5
1,025,744 + 0.2
1,025,755 + -1.7
1,025,782 - -1.5
1,025,888 + -3.6
1,025,901 + -2.7
1,026,040 - 13161 mRNA_4793 0.12 -3.5
1,026,047 - 13161 mRNA_4793 0.12 -2.2
1,026,050 + 13161 mRNA_4793 0.13 -2.1
1,026,056 - 13161 mRNA_4793 0.13 -3.5
1,026,065 - 13161 mRNA_4793 0.14 -2.7
1,026,210 + 13161 mRNA_4793 0.24 -6.2
1,026,783 + 13161 mRNA_4793 0.63 -3.8
1,026,794 + 13161 mRNA_4793 0.64 -3.5
1,026,934 - 13161 mRNA_4793 0.73 -2.8
1,026,937 + 13161 mRNA_4793 0.74 -2.2
1,027,018 + 13161 mRNA_4793 0.79 -3.1
1,027,573 - -0.7
1,027,796 + 13162 mRNA_4794 0.23 -0.9
1,028,068 + 13162 mRNA_4794 0.72 0.4
1,028,114 + 13162 mRNA_4794 0.80 -1.7