Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4735

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4734: 13102 - Hypothetical Protein, at 883185 to 884845 13102 mRNA_4735: 13103 - K03654 recQ ATP-dependent DNA helicase RecQ, at 885330 to 888560 13103 mRNA_4736: 13104 - K02503 HINT1, hinT, hit histidine triad (HIT) family protein, at 888664 to 889665 13104

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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884,338 - 13102 mRNA_4734 0.69 1.0
884,713 - -0.6
884,958 + 0.8
885,041 - 1.0
885,160 - 0.1
885,162 - 1.3
885,165 + 1.1
885,179 - -0.2
885,445 + 0.6
885,462 - -0.2
885,469 - 1.2
885,489 + -2.4
885,597 - 0.7
885,601 - 1.4
885,606 + -0.5
885,613 + 0.1
885,620 + -0.1
885,627 + 0.5
885,650 + -0.1
885,790 - 13103 mRNA_4735 0.14 2.9
885,812 + 13103 mRNA_4735 0.15 -1.0
885,927 + 13103 mRNA_4735 0.18 -0.6
885,937 - 13103 mRNA_4735 0.19 -2.1
886,010 - 13103 mRNA_4735 0.21 0.1
886,011 + 13103 mRNA_4735 0.21 0.1
886,044 + 13103 mRNA_4735 0.22 0.8
886,061 + 13103 mRNA_4735 0.23 0.9
886,204 - 13103 mRNA_4735 0.27 -0.2
886,512 - 13103 mRNA_4735 0.37 0.6
886,639 + 13103 mRNA_4735 0.41 0.1
886,791 - 13103 mRNA_4735 0.45 1.0
886,805 - 13103 mRNA_4735 0.46 1.7
886,827 + 13103 mRNA_4735 0.46 2.7
887,103 - 13103 mRNA_4735 0.55 0.6
887,127 - 13103 mRNA_4735 0.56 0.0
887,208 - 13103 mRNA_4735 0.58 0.2
887,338 - 13103 mRNA_4735 0.62 -0.1
887,625 - 13103 mRNA_4735 0.71 0.7
887,819 + 13103 mRNA_4735 0.77 1.1
887,840 - 13103 mRNA_4735 0.78 -1.1
887,900 + 13103 mRNA_4735 0.80 -0.4
887,904 + 13103 mRNA_4735 0.80 0.7
887,945 + 13103 mRNA_4735 0.81 0.8
887,946 - 13103 mRNA_4735 0.81 0.4
888,080 - 13103 mRNA_4735 0.85 -1.9
888,117 - 13103 mRNA_4735 0.86 -0.5
888,121 + 13103 mRNA_4735 0.86 0.6
888,396 + 0.8
888,397 - 0.8
888,534 + -0.3
888,573 - -0.9
888,587 + 0.4
888,817 - 13104 mRNA_4736 0.15 0.0
889,039 + 13104 mRNA_4736 0.37 1.2
889,192 - 13104 mRNA_4736 0.53 -0.4
889,282 - 13104 mRNA_4736 0.62 0.1
889,296 + 13104 mRNA_4736 0.63 -0.5
889,297 - 13104 mRNA_4736 0.63 0.9
889,301 - 13104 mRNA_4736 0.64 0.2
889,319 + 13104 mRNA_4736 0.65 0.8
889,440 + 13104 mRNA_4736 0.77 0.7