Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4712

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4711: 13079 - KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily, at 826547 to 830720 13079 mRNA_4712: 13080 - HMMPfam-N-terminal C2 in EEIG1 and EHBP1 proteins-PF10358, at 830953 to 834055 13080 mRNA_4713: 13081 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 834390 to 838234 13081

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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829,970 - 13079 mRNA_4711 0.82 0.0
830,076 + 13079 mRNA_4711 0.85 -0.7
830,162 + 13079 mRNA_4711 0.87 0.8
830,411 - 0.1
830,518 - -1.2
830,525 + 0.7
830,527 - -0.2
830,644 + -2.8
830,794 + 0.0
830,943 - -0.2
831,409 + 13080 mRNA_4712 0.15 0.3
831,521 - 13080 mRNA_4712 0.18 1.1
831,703 - 13080 mRNA_4712 0.24 0.1
831,848 + 13080 mRNA_4712 0.29 0.0
832,424 - 13080 mRNA_4712 0.47 0.1
832,562 + 13080 mRNA_4712 0.52 0.7
832,575 + 13080 mRNA_4712 0.52 -0.0
832,709 - 13080 mRNA_4712 0.57 0.5
832,841 - 13080 mRNA_4712 0.61 0.3
832,886 - 13080 mRNA_4712 0.62 1.7
833,009 - 13080 mRNA_4712 0.66 1.2
833,158 - 13080 mRNA_4712 0.71 0.5
833,589 - 13080 mRNA_4712 0.85 1.4
833,737 + 13080 mRNA_4712 0.90 1.4
833,744 - 13080 mRNA_4712 0.90 1.9
833,799 + 0.8
833,805 - 0.7
833,861 - 1.0
833,877 - 1.0
833,888 + 1.1
833,889 - 1.2
833,892 + 1.1
833,907 + 1.0
833,908 - 1.0
833,909 + 1.5
833,915 - 1.3
834,029 + 2.0
834,035 - 0.1
834,045 - 2.1
834,181 - -1.8
834,190 - -0.2
834,200 - 0.2
834,201 - -1.9
834,201 + -0.0
834,201 + -0.9
834,205 + -1.3
834,216 + 0.7
834,222 + -0.3
834,344 - 0.2
834,350 + 0.5
834,474 + 0.8
834,489 + -1.2