Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4711

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4710: 13078 - BLAST putative mannoprotein [Rhizoctonia solani 123E], at 824184 to 826218 13078 mRNA_4711: 13079 - KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily, at 826547 to 830720 13079 mRNA_4712: 13080 - HMMPfam-N-terminal C2 in EEIG1 and EHBP1 proteins-PF10358, at 830953 to 834055 13080

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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825,858 - 13078 mRNA_4710 0.82 1.0
825,987 - 13078 mRNA_4710 0.89 -1.1
826,022 - -0.7
826,244 - 0.2
826,246 - 1.1
826,247 - -0.2
826,256 - 0.2
826,268 - 0.2
826,277 - -0.2
826,289 - 1.0
826,289 - -0.1
826,290 + -0.7
826,295 + 0.6
826,306 - -1.1
826,314 + 0.6
826,470 - 4.1
826,491 + -0.0
826,584 - 0.6
826,686 + 0.9
826,728 + -0.4
826,885 + 1.0
827,503 + 13079 mRNA_4711 0.23 0.9
827,874 + 13079 mRNA_4711 0.32 1.0
828,990 - 13079 mRNA_4711 0.59 0.5
829,030 - 13079 mRNA_4711 0.59 0.8
829,129 - 13079 mRNA_4711 0.62 0.9
829,168 + 13079 mRNA_4711 0.63 1.0
829,358 - 13079 mRNA_4711 0.67 0.2
829,373 - 13079 mRNA_4711 0.68 -1.0
829,476 + 13079 mRNA_4711 0.70 1.2
829,606 - 13079 mRNA_4711 0.73 1.4
829,619 - 13079 mRNA_4711 0.74 0.2
829,635 + 13079 mRNA_4711 0.74 0.0
829,970 - 13079 mRNA_4711 0.82 0.0
830,076 + 13079 mRNA_4711 0.85 -0.7
830,162 + 13079 mRNA_4711 0.87 0.8
830,411 - 0.1
830,518 - -1.2
830,525 + 0.7
830,527 - -0.2
830,644 + -2.8
830,794 + 0.0
830,943 - -0.2
831,409 + 13080 mRNA_4712 0.15 0.3
831,521 - 13080 mRNA_4712 0.18 1.1
831,703 - 13080 mRNA_4712 0.24 0.1