Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4609

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4608: 12976 - KOG0254 Predicted transporter (major facilitator superfamily), at 572565 to 575380 12976 mRNA_4609: 12977 - K00008 SORD, gutB L-iditol 2-dehydrogenase, at 575731 to 577281 12977

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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574,840 - 12976 mRNA_4608 0.81 1.5
575,011 + 12976 mRNA_4608 0.87 -0.1
575,174 - -1.3
575,193 + 0.4
575,483 - 0.5
575,504 - 0.5
575,510 - 0.7
575,511 + -0.2
575,516 - 0.6
575,519 - 0.2
575,520 - 0.7
575,521 + -0.1
575,538 - -1.0
575,553 - 0.0
575,559 + -0.1
575,562 - 0.1
575,611 - -0.3
575,613 + 1.0
575,616 + -1.2
575,617 - 0.1
575,629 + 0.2
575,636 - 0.0
575,640 - 0.0
575,643 + 0.2
575,643 + 2.2
575,646 - 0.9
575,651 + -0.7
575,656 + -0.9
575,657 + 0.1
575,666 + 1.5
575,687 - -0.6
575,689 + -0.3
575,753 - -0.6
575,908 + 12977 mRNA_4609 0.11 -1.1
575,912 + 12977 mRNA_4609 0.12 -0.6
575,915 - 12977 mRNA_4609 0.12 1.6
575,922 - 12977 mRNA_4609 0.12 0.3
575,941 - 12977 mRNA_4609 0.14 1.2
575,948 + 12977 mRNA_4609 0.14 0.1
576,952 - 12977 mRNA_4609 0.79 -0.4
576,963 + 12977 mRNA_4609 0.79 -0.3
577,511 - -0.8
577,693 - -1.3
577,696 + -2.1
578,122 - 0.5
578,248 - 0.0
578,260 + 0.7
578,264 + -1.0
578,270 + -1.6
578,272 + -1.0
578,277 + 1.1
578,280 - -0.3