Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4607

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4606: 12974 - HMMPfam-Zinc-binding dehydrogenase-PF00107,HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,ProSitePatterns-Zinc-containing alcohol dehydrogenases signature.-PS00059,SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 569895 to 571183 12974 mRNA_4607: 12975 - BLAST TrfA domain protein, putative [Rhizoctonia solani AG-..., at 571268 to 571973 12975 mRNA_4608: 12976 - KOG0254 Predicted transporter (major facilitator superfamily), at 572565 to 575380 12976

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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570,588 - 12974 mRNA_4606 0.54 -0.6
570,604 - 12974 mRNA_4606 0.55 0.4
570,671 + 12974 mRNA_4606 0.60 0.4
570,777 + 12974 mRNA_4606 0.68 -1.1
571,193 + 0.5
571,250 + -2.1
571,257 - 1.1
571,360 + 12975 mRNA_4607 0.13 -1.6
571,397 - 12975 mRNA_4607 0.18 -0.0
571,564 - 12975 mRNA_4607 0.42 -0.3
571,680 + 12975 mRNA_4607 0.58 0.2
571,924 - -0.7
572,085 + -0.0
572,100 + 1.3
572,113 - 0.9
572,118 - 1.0
572,151 + -0.2
572,179 + 1.0
572,269 + 0.3
572,593 - -0.0
572,830 - 0.1