Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4548

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4547: 12915 - ProSiteProfiles-SET domain profile.-PS50280,SUPERFAMILY--SSF82199, at 432456 to 433199 12915 mRNA_4548: 12916 - K03392 ACMSD aminocarboxymuconate-semialdehyde decarboxylase, at 433580 to 435269 12916 mRNA_4549: 12917 - HMMPfam-Protein of unknown function (DUF1769)-PF08588, at 435952 to 437989 12917

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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432,801 - 12915 mRNA_4547 0.46 -0.5
433,111 - 12915 mRNA_4547 0.88 -1.0
433,145 + 0.2
433,258 - 0.1
433,270 - -0.2
433,699 - 0.3
433,836 - 12916 mRNA_4548 0.15 0.1
433,836 - 12916 mRNA_4548 0.15 1.0
433,857 + 12916 mRNA_4548 0.16 2.0
434,009 - 12916 mRNA_4548 0.25 0.1
434,157 + 12916 mRNA_4548 0.34 -0.6
434,641 + 12916 mRNA_4548 0.63 0.9
434,731 - 12916 mRNA_4548 0.68 -0.1
435,120 + 0.5
435,132 - 0.8
435,141 - 0.2
435,155 - 1.7
435,156 + -0.8
435,163 - 0.6
435,300 + -0.4
435,304 + 1.8
435,438 - 0.6
435,443 - 0.7
435,454 + -0.5
435,574 - 0.5
435,592 - -0.7
435,595 + 0.3
435,598 - -0.3
435,599 + 0.1
435,631 + 0.1
435,739 - 0.5
435,743 + -0.2
435,747 + -0.2
435,754 - 0.1
435,759 + 1.0
435,760 - 0.9
435,766 - 0.0
435,769 + 1.3
435,784 - 0.5
435,789 + -0.0
435,924 + 1.0
435,927 - 2.6
435,931 + 0.5
435,956 - 1.2
435,962 - -0.2
436,073 + 0.7
436,231 + 12917 mRNA_4549 0.14 2.1