Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4540

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4539: 12907 - HMMPfam-DNA polymerase subunit Cdc27-PF09507, at 410744 to 412303 12907 mRNA_4540: 12908 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 412485 to 416287 12908 mRNA_4541: 12909 - K03457 TC.NCS1 nucleobase-cation symporter-1, NCS1 family, at 417161 to 419747 12909

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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411,827 + 12907 mRNA_4539 0.69 0.8
412,174 + -0.2
412,749 + -0.2
414,317 + 12908 mRNA_4540 0.48 0.3
414,351 - 12908 mRNA_4540 0.49 0.2
414,789 - 12908 mRNA_4540 0.61 1.2
414,949 + 12908 mRNA_4540 0.65 2.4
415,108 - 12908 mRNA_4540 0.69 1.1
415,235 + 12908 mRNA_4540 0.72 2.1
415,677 - 12908 mRNA_4540 0.84 0.7
415,704 + 12908 mRNA_4540 0.85 1.4
415,813 - 12908 mRNA_4540 0.88 -0.1
415,826 - 12908 mRNA_4540 0.88 -1.6
415,938 + 1.1
416,111 - 1.4
416,246 - 0.1
416,272 - 2.1
416,273 + -0.3
416,284 + 0.3
416,394 - -0.0
416,420 + 1.0
416,428 + -0.6
416,548 - 1.1
416,572 - -0.1
416,733 - -1.6
416,756 - 1.4
416,859 - 0.2
416,868 - -1.2
416,877 + 1.4
416,910 - -1.5
416,914 - 0.0
416,915 + 0.7
416,916 + 0.4