Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4523

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4522: 12890 - KOG0967 ATP-dependent DNA ligase I, at 375338 to 377134 12890 mRNA_4523: 12891 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 377162 to 379234 12891 mRNA_4524: 12892 - Hypothetical Protein, at 379640 to 380547 12892

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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376,264 + 12890 mRNA_4522 0.52 1.0
376,323 - 12890 mRNA_4522 0.55 -1.0
377,259 - 0.3
378,019 + 12891 mRNA_4523 0.41 1.9
378,171 + 12891 mRNA_4523 0.49 -0.4
378,592 - 12891 mRNA_4523 0.69 1.1
378,870 - 12891 mRNA_4523 0.82 0.5
379,009 - 12891 mRNA_4523 0.89 1.5
379,047 + -1.3
379,051 + 0.5
379,071 - 0.8
379,091 + -1.1
379,166 - 0.2
379,182 + 1.6
379,182 - -0.6
379,190 - -1.4
379,191 + 0.2
379,195 - 1.0
379,222 + 0.6
379,323 - 1.3
379,330 + 1.4
379,338 + -0.7
379,338 + 0.1
379,465 - 0.6
379,481 - 2.0
379,506 - 0.1
379,618 - 0.8
379,756 - 12892 mRNA_4524 0.13 -0.1
379,764 + 12892 mRNA_4524 0.14 0.9
379,765 + 12892 mRNA_4524 0.14 -0.0
379,771 + 12892 mRNA_4524 0.14 1.3
379,774 - 12892 mRNA_4524 0.15 -0.4
379,932 + 12892 mRNA_4524 0.32 0.5
380,089 + 12892 mRNA_4524 0.49 -1.1
380,187 + 12892 mRNA_4524 0.60 -0.9