Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4480

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4479: 12847 - K17290 HTATIP2 oxidoreductase, at 282366 to 283335 12847 mRNA_4480: 12848 - Hypothetical Protein, at 283832 to 284551 12848 mRNA_4481: 12849 - Hypothetical Protein, at 284751 to 285386 12849

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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282,839 - 12847 mRNA_4479 0.49 -0.7
283,250 + -1.6
283,553 + -0.8
283,559 - -0.2
283,565 + -0.2
283,567 + 0.1
283,582 - 0.7
283,585 + 0.1
283,694 + 0.5
283,717 - -0.6
283,720 - 2.2
283,739 + 0.1
283,742 - 1.0
283,868 - 1.1
283,871 + 0.2
283,875 + -1.9
284,019 + 12848 mRNA_4480 0.26 0.7
284,036 - 12848 mRNA_4480 0.28 1.2
284,060 + 12848 mRNA_4480 0.32 0.3
284,061 + 12848 mRNA_4480 0.32 -0.4
284,170 + 12848 mRNA_4480 0.47 1.7
284,181 + 12848 mRNA_4480 0.48 -0.7
284,187 - 12848 mRNA_4480 0.49 1.4
284,197 + 12848 mRNA_4480 0.51 -0.0
284,208 - 12848 mRNA_4480 0.52 -1.6
284,215 - 12848 mRNA_4480 0.53 -0.4
284,254 - 12848 mRNA_4480 0.59 -0.1
284,269 + 12848 mRNA_4480 0.61 -0.7
284,291 + 12848 mRNA_4480 0.64 0.2
284,300 + 12848 mRNA_4480 0.65 -1.3
284,301 + 12848 mRNA_4480 0.65 -0.2
284,320 + 12848 mRNA_4480 0.68 1.6
284,324 - 12848 mRNA_4480 0.68 1.6
284,339 + 12848 mRNA_4480 0.70 -0.4
284,386 + 12848 mRNA_4480 0.77 0.3
284,393 + 12848 mRNA_4480 0.78 -0.1
284,445 - 12848 mRNA_4480 0.85 -0.4
284,482 + 0.3
284,503 + 0.2
284,516 + 0.7
284,517 - 1.3
284,540 + 0.2
284,540 + -1.3
284,551 - -0.5
284,561 + -0.8
284,561 + 0.0
284,562 + 0.2
284,570 + -1.2
284,572 + 1.4
284,579 - -2.9
284,580 + -2.5
284,583 + 0.4
284,607 + -0.2
284,626 + 0.3
284,763 - 0.1
284,768 - 0.7
284,778 - -1.3
284,785 + -0.8
284,905 - 12849 mRNA_4481 0.24 -0.5
284,928 + 12849 mRNA_4481 0.28 -0.3
285,151 - 12849 mRNA_4481 0.63 0.5
285,196 + 12849 mRNA_4481 0.70 1.8
285,210 - 12849 mRNA_4481 0.72 0.4
285,244 + 12849 mRNA_4481 0.78 -1.0