Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4437

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4436: 12804 - Hypothetical Protein, at 178306 to 178939 12804 mRNA_4437: 12805 - KOG4629 Predicted mechanosensitive ion channel, at 179176 to 181994 12805 mRNA_4438: 12806 - Hypothetical Protein, at 182518 to 183149 12806

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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178,180 - 0.5
178,275 + 0.2
178,278 - -0.5
178,309 - 0.8
178,315 - -0.2
178,320 - 0.2
178,320 - 0.5
178,322 + -0.0
178,324 + 1.3
178,335 + 0.5
178,341 + 1.0
178,347 + -1.5
178,358 - -1.6
178,381 - 12804 mRNA_4436 0.12 1.0
178,385 - 12804 mRNA_4436 0.12 0.6
178,488 + 12804 mRNA_4436 0.29 0.9
178,622 - 12804 mRNA_4436 0.50 0.7
178,627 + 12804 mRNA_4436 0.51 2.5
178,736 + 12804 mRNA_4436 0.68 0.8
178,820 + 12804 mRNA_4436 0.81 0.6
178,867 + 12804 mRNA_4436 0.88 -0.4
178,884 + 1.5
178,885 - -0.8
178,939 - -0.6
179,029 - -3.2
179,032 - 0.1
179,033 + -0.6
179,039 + -1.0
179,039 + 0.1
179,078 - 1.4
179,226 - -0.8
179,233 + -0.4
179,255 + -1.2
179,707 - 12805 mRNA_4437 0.19 -0.1
179,793 + 12805 mRNA_4437 0.22 0.4
179,910 + 12805 mRNA_4437 0.26 0.9
179,959 + 12805 mRNA_4437 0.28 0.6
179,988 - 12805 mRNA_4437 0.29 1.8
180,064 + 12805 mRNA_4437 0.32 -1.2
180,107 + 12805 mRNA_4437 0.33 -0.6
180,210 - 12805 mRNA_4437 0.37 -0.1
180,480 - 12805 mRNA_4437 0.46 1.0
180,542 - 12805 mRNA_4437 0.48 -0.6
180,553 - 12805 mRNA_4437 0.49 -0.2
180,673 - 12805 mRNA_4437 0.53 1.0
180,922 - 12805 mRNA_4437 0.62 0.8
181,265 + 12805 mRNA_4437 0.74 -0.4
181,306 - 12805 mRNA_4437 0.76 -0.2
181,412 + 12805 mRNA_4437 0.79 0.7
181,660 - 12805 mRNA_4437 0.88 0.0
182,260 + -0.3
182,277 + 1.9
182,427 - 0.2
182,439 - -0.8
182,459 + -0.2
182,492 + -0.1
182,519 + 0.6
182,534 + -2.2
182,594 + 12806 mRNA_4438 0.12 1.1
182,610 + 12806 mRNA_4438 0.15 0.1
182,754 + 12806 mRNA_4438 0.37 2.0
182,770 - 12806 mRNA_4438 0.40 -0.9
182,892 + 12806 mRNA_4438 0.59 -0.6