Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4378

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4377: 12745 - Hypothetical Protein, at 52516 to 53498 12745 mRNA_4378: 12746 - KOG2432 Uncharacterized conserved protein, at 53641 to 56318 12746 mRNA_4379: 12747 - KOG4359 Protein kinase C inhibitor-like protein, at 56702 to 58135 12747

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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52,849 + 12745 mRNA_4377 0.34 1.1
52,852 - 12745 mRNA_4377 0.34 0.1
52,854 + 12745 mRNA_4377 0.34 0.9
52,956 + 12745 mRNA_4377 0.45 -1.3
53,093 - 12745 mRNA_4377 0.59 -0.6
53,387 + 12745 mRNA_4377 0.89 0.8
53,449 + -0.9
53,487 + 2.1
53,556 + -0.5
53,584 - 0.2
53,585 + -1.1
53,708 - 0.4
53,716 + 0.6
53,730 - -0.5
53,733 + -2.1
53,866 + -0.2
53,924 + 12746 mRNA_4378 0.11 -0.3
54,053 - 12746 mRNA_4378 0.15 0.3
54,161 + 12746 mRNA_4378 0.19 -1.0
54,174 - 12746 mRNA_4378 0.20 -0.2
54,343 + 12746 mRNA_4378 0.26 0.0
54,468 - 12746 mRNA_4378 0.31 -1.0
55,098 + 12746 mRNA_4378 0.54 -1.5
55,117 + 12746 mRNA_4378 0.55 0.3
55,147 + 12746 mRNA_4378 0.56 0.4
55,148 - 12746 mRNA_4378 0.56 -0.1
55,155 + 12746 mRNA_4378 0.57 -1.2
55,326 - 12746 mRNA_4378 0.63 0.3
55,467 - 12746 mRNA_4378 0.68 -1.9
55,679 + 12746 mRNA_4378 0.76 -0.0
56,203 - -0.3
56,235 + -0.4
56,332 + 0.8
56,506 + 0.4
56,644 + 0.2
56,654 - -1.2
56,739 + -0.2
56,801 + 0.2
56,932 - 12747 mRNA_4379 0.16 -0.1
56,940 - 12747 mRNA_4379 0.17 -0.8
56,949 - 12747 mRNA_4379 0.17 0.1
56,949 + 12747 mRNA_4379 0.17 -0.1
56,950 + 12747 mRNA_4379 0.17 -0.1
56,959 + 12747 mRNA_4379 0.18 2.0
57,075 + 12747 mRNA_4379 0.26 0.0
57,226 - 12747 mRNA_4379 0.37 2.3
57,228 - 12747 mRNA_4379 0.37 1.2
57,231 - 12747 mRNA_4379 0.37 0.7