Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4375

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4374: 12742 - K00232 E1.3.3.6, ACOX1, ACOX3 acyl-CoA oxidase, at 43132 to 46033 12742 mRNA_4375: 12743 - K14209 SLC36A, PAT solute carrier family 36 (proton-coupled amino acid transporter), at 46350 to 49394 12743 mRNA_4376: 12744 - BLAST glycosyltransferase family 25 [Puccinia cf. psidii AE..., at 49826 to 51100 12744

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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45,445 + 12742 mRNA_4374 0.80 -1.8
45,452 - 12742 mRNA_4374 0.80 -1.4
45,462 + 12742 mRNA_4374 0.80 -0.5
45,471 - 12742 mRNA_4374 0.81 -2.1
45,741 - 12742 mRNA_4374 0.90 -2.0
45,744 - -0.5
45,744 + -3.8
45,773 + -2.7
45,906 + -0.4
45,912 - -2.2
45,918 - -2.1
45,996 - -3.1
46,018 + 1.7
46,034 - 1.8
46,055 - -1.6
46,059 + -1.8
46,060 + -1.1
46,074 + -0.2
46,155 - 0.5
46,186 + -0.9
46,189 - -0.3
46,191 + -1.8
46,192 + -0.9
46,195 - -0.3
46,201 + -0.2
46,202 + -0.6
46,203 - -1.9
46,205 + -1.7
46,208 - -0.4
46,208 - -0.1
46,217 + -1.1
46,217 + -0.0
46,219 - -0.2
46,227 - -0.2
46,230 + 0.9
46,233 + -0.1
46,235 + 1.6
46,237 - -2.3
46,237 + 1.4
46,287 + 1.1
46,334 + 0.1
46,342 - -0.5
46,346 + 0.9
46,355 + 1.3
46,355 - -0.5
46,367 + 2.5
46,367 + -0.1
46,367 - 1.2
46,368 - -0.5
46,369 - 2.3
46,383 - -0.9
46,384 + -0.1
46,387 + -1.0
46,623 - 0.6
46,759 + 12743 mRNA_4375 0.13 0.3
46,940 - 12743 mRNA_4375 0.19 -0.3
46,947 - 12743 mRNA_4375 0.20 0.1
46,956 + 12743 mRNA_4375 0.20 -0.9
46,976 + 12743 mRNA_4375 0.21 -0.1
47,119 + 12743 mRNA_4375 0.25 -0.5
47,155 - 12743 mRNA_4375 0.26 0.6
47,579 + 12743 mRNA_4375 0.40 -0.6
47,664 + 12743 mRNA_4375 0.43 0.9
47,758 + 12743 mRNA_4375 0.46 -0.1
47,837 - 12743 mRNA_4375 0.49 0.4
47,956 + 12743 mRNA_4375 0.53 -0.0
48,013 + 12743 mRNA_4375 0.55 -0.2
48,024 - 12743 mRNA_4375 0.55 -0.5
48,445 + 12743 mRNA_4375 0.69 1.4
48,715 - 12743 mRNA_4375 0.78 1.0
48,716 - 12743 mRNA_4375 0.78 1.5
48,905 + 12743 mRNA_4375 0.84 -0.5
49,014 + 12743 mRNA_4375 0.87 1.3
49,028 - 12743 mRNA_4375 0.88 0.6
49,176 + -2.1
49,334 - -0.4
49,348 + 0.0
49,351 - 1.7
49,397 - -0.8
49,415 - 0.7
49,433 - 0.0
49,446 - -1.4
49,628 - 0.3
49,747 - -0.2
49,901 + 1.7
50,136 + 12744 mRNA_4376 0.24 2.3
50,139 - 12744 mRNA_4376 0.25 1.1