Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4271

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4270: 12638 - Hypothetical Protein, at 1758369 to 1759007 12638 mRNA_4271: 12639 - K01196 AGL glycogen debranching enzyme, at 1759118 to 1764832 12639 mRNA_4272: 12640 - K02433 gatA, QRSL1 aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A, at 1765138 to 1767269 12640

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,758,144 + 0.5
1,758,228 + 0.2
1,758,239 - -1.8
1,758,330 - -0.4
1,758,360 + 0.4
1,758,391 + 0.8
1,758,703 + 12638 mRNA_4270 0.52 -0.7
1,758,978 - 0.7
1,759,007 - 0.2
1,759,349 + 1.2
1,759,635 + -0.7
1,759,758 + 12639 mRNA_4271 0.11 -0.3
1,759,801 - 12639 mRNA_4271 0.12 0.4
1,760,096 + 12639 mRNA_4271 0.17 -2.5
1,760,280 - 12639 mRNA_4271 0.20 -2.3
1,760,406 + 12639 mRNA_4271 0.23 0.8
1,760,429 - 12639 mRNA_4271 0.23 -0.8
1,760,430 + 12639 mRNA_4271 0.23 -1.5
1,760,541 + 12639 mRNA_4271 0.25 -0.0
1,760,655 + 12639 mRNA_4271 0.27 0.6
1,760,682 + 12639 mRNA_4271 0.27 -0.6
1,760,786 - 12639 mRNA_4271 0.29 -1.0
1,761,192 - 12639 mRNA_4271 0.36 -1.1
1,761,524 - 12639 mRNA_4271 0.42 -1.6
1,761,548 - 12639 mRNA_4271 0.43 0.3
1,761,760 - 12639 mRNA_4271 0.46 1.1
1,762,395 + 12639 mRNA_4271 0.57 -1.8
1,762,536 + 12639 mRNA_4271 0.60 -1.0
1,762,689 - 12639 mRNA_4271 0.62 1.3
1,762,827 + 12639 mRNA_4271 0.65 -0.0
1,763,321 - 12639 mRNA_4271 0.74 -0.1
1,763,559 - 12639 mRNA_4271 0.78 -3.2
1,763,570 - 12639 mRNA_4271 0.78 -0.9
1,764,481 - 0.1
1,764,587 - -1.5
1,764,589 - 1.4
1,764,590 - -1.2
1,764,618 + 0.7
1,764,748 + -1.1
1,764,755 + -2.7
1,764,755 + 0.3
1,764,759 - -1.6
1,764,882 + -0.1
1,764,884 + 0.3
1,764,901 - 0.3
1,764,901 - 1.5
1,764,915 + 1.3
1,764,915 + -0.5
1,764,921 + 0.7
1,764,932 + 0.4
1,764,935 + -0.8
1,765,074 - 1.9
1,765,074 - 0.5
1,765,080 - 0.1
1,765,082 - 0.0
1,765,083 + 0.3
1,765,085 + -1.1
1,765,087 - 0.5
1,765,089 - 1.1
1,765,093 + 0.2