Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4257

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4256: 12624 - HMMPfam-Putative serine esterase (DUF676)-PF05057,SUPERFAMILY--SSF53474, at 1723590 to 1725479 12624 mRNA_4257: 12625 - K00295 MTD1 methylenetetrahydrofolate dehydrogenase (NAD+), at 1725575 to 1726851 12625 mRNA_4258: 12626 - KOG4044 Mitochondrial associated endoribonuclease MAR1 (isochorismatase superfamily), at 1727283 to 1728545 12626

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,724,598 - 12624 mRNA_4256 0.53 0.2
1,724,600 + 12624 mRNA_4256 0.53 0.6
1,724,615 - 12624 mRNA_4256 0.54 -0.0
1,724,637 - 12624 mRNA_4256 0.55 1.2
1,724,909 + 12624 mRNA_4256 0.70 -0.3
1,725,056 + 12624 mRNA_4256 0.78 2.6
1,725,067 + 12624 mRNA_4256 0.78 0.4
1,725,170 - 12624 mRNA_4256 0.84 0.4
1,725,181 + 12624 mRNA_4256 0.84 2.1
1,725,486 + 0.4
1,725,588 - -0.4
1,725,615 + 0.4
1,725,745 - 12625 mRNA_4257 0.13 -0.7
1,726,011 + 12625 mRNA_4257 0.34 -0.5
1,726,324 - 12625 mRNA_4257 0.59 0.6
1,726,328 + 12625 mRNA_4257 0.59 -1.2
1,726,358 - 12625 mRNA_4257 0.61 -1.1
1,726,643 - 12625 mRNA_4257 0.84 -1.6
1,726,661 + 12625 mRNA_4257 0.85 -0.6
1,726,781 - 0.1
1,727,068 - 0.3
1,727,072 + -0.3
1,727,199 - 0.2
1,727,206 + -0.8
1,727,209 - 0.3
1,727,211 - 0.1
1,727,214 + 0.6
1,727,215 - 0.9
1,727,218 - -0.5
1,727,227 + 0.9
1,727,231 + 0.4
1,727,232 + 1.6
1,727,238 + -0.4
1,727,312 - -0.2
1,727,322 - -0.1
1,727,323 + -0.0
1,727,327 + 0.5
1,727,337 + 0.1
1,727,337 - 0.2
1,727,347 + -0.4
1,727,360 - -2.0
1,727,519 + 12626 mRNA_4258 0.19 -2.3
1,727,757 - 12626 mRNA_4258 0.38 -0.5
1,727,803 + 12626 mRNA_4258 0.41 0.1