Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4220

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4219: 12587 - HMMPfam-Protein phosphatase inhibitor 2 (IPP-2)-PF04979, at 1642992 to 1644310 12587 mRNA_4220: 12588 - K19932 NCS1 neuronal calcium sensor 1, at 1644542 to 1645935 12588 mRNA_4221: 12589 - HMMPfam-Sodium/hydrogen exchanger family-PF00999, at 1646104 to 1647809 12589

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,643,569 - 12587 mRNA_4219 0.44 -0.5
1,643,662 - 12587 mRNA_4219 0.51 -0.2
1,643,822 - 12587 mRNA_4219 0.63 -0.5
1,643,952 + 12587 mRNA_4219 0.73 0.3
1,644,098 - 12587 mRNA_4219 0.84 0.4
1,644,383 - 0.5
1,644,401 - -0.3
1,644,515 + -1.0
1,644,969 - 12588 mRNA_4220 0.31 -0.5
1,645,533 - 12588 mRNA_4220 0.71 0.5
1,645,537 - 12588 mRNA_4220 0.71 2.1
1,645,556 - 12588 mRNA_4220 0.73 -1.3
1,645,557 + 12588 mRNA_4220 0.73 -1.3
1,645,569 + 12588 mRNA_4220 0.74 -1.7
1,645,618 + 12588 mRNA_4220 0.77 -0.9
1,645,667 - 12588 mRNA_4220 0.81 0.3
1,645,671 - 12588 mRNA_4220 0.81 0.4
1,645,699 + 12588 mRNA_4220 0.83 -0.8
1,645,817 - 0.2
1,645,843 - -0.4
1,645,852 - 0.3
1,645,866 - -0.4
1,645,903 + 0.6
1,645,975 - -1.3
1,645,979 - -0.4
1,646,000 - -0.2
1,646,028 - -0.0
1,646,038 + 0.2
1,646,140 - -0.2
1,646,150 + 0.9
1,646,155 + 0.8
1,646,159 - -1.0
1,646,168 + -1.6
1,646,335 + 12589 mRNA_4221 0.14 -0.4
1,646,382 + 12589 mRNA_4221 0.16 1.2
1,646,579 - 12589 mRNA_4221 0.28 -1.4
1,646,619 - 12589 mRNA_4221 0.30 0.5
1,646,756 + 12589 mRNA_4221 0.38 -0.6
1,646,756 - 12589 mRNA_4221 0.38 0.3
1,646,759 - 12589 mRNA_4221 0.38 -0.1
1,646,849 + 12589 mRNA_4221 0.44 0.8
1,646,873 + 12589 mRNA_4221 0.45 0.8