Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4200

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4199: 12567 - KOG1303 Amino acid transporters, at 1592651 to 1594788 12567 mRNA_4200: 12568 - Hypothetical Protein, at 1595290 to 1595787 12568 mRNA_4201: 12569 - K02913 RP-L33, MRPL33, rpmG large subunit ribosomal protein L33, at 1596193 to 1596692 12569

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,594,415 - 12567 mRNA_4199 0.83 1.6
1,594,500 - 12567 mRNA_4199 0.86 1.2
1,594,520 + 12567 mRNA_4199 0.87 -0.6
1,594,525 - 12567 mRNA_4199 0.88 1.7
1,594,541 + 12567 mRNA_4199 0.88 -1.0
1,594,553 + 12567 mRNA_4199 0.89 -1.3
1,594,565 + 12567 mRNA_4199 0.90 0.6
1,594,577 - -0.8
1,594,681 - -0.9
1,594,702 + 0.8
1,594,705 - 0.9
1,594,726 + 2.8
1,594,738 - -0.9
1,594,747 - 0.5
1,594,836 - 1.0
1,594,851 - -0.2
1,594,853 + -0.3
1,594,853 - -0.0
1,594,855 - -1.7
1,594,867 + 0.2
1,594,870 + 0.1
1,594,873 - -0.3
1,594,878 - 1.6
1,594,890 + 2.9
1,594,895 - 0.6
1,594,901 + -0.0
1,594,901 - -1.2
1,594,906 + -0.3
1,594,912 + 1.3
1,594,922 + 1.4
1,594,926 + -0.5
1,594,944 + -1.2
1,594,962 + -1.1
1,595,056 + -0.5
1,595,081 - -0.4
1,595,149 + 1.3
1,595,170 + 0.6
1,595,176 - -0.3
1,595,179 + 0.3
1,595,189 + -0.4
1,595,194 + -1.2
1,595,199 + 0.5
1,595,206 - 0.2
1,595,208 - 0.3
1,595,212 - -0.8
1,595,215 - -0.8
1,595,215 + 1.3
1,595,249 - 0.1
1,595,261 - 1.0
1,595,276 + -0.7
1,595,276 - -0.9
1,595,277 + -1.0
1,595,286 - -0.1
1,595,288 - -1.1
1,595,318 - 0.3
1,595,363 - 12568 mRNA_4200 0.15 -0.4
1,595,395 + 12568 mRNA_4200 0.21 0.1
1,595,396 + 12568 mRNA_4200 0.21 1.5
1,595,402 + 12568 mRNA_4200 0.22 0.0
1,595,419 + 12568 mRNA_4200 0.26 -0.2
1,595,443 + 12568 mRNA_4200 0.31 -0.4
1,595,455 + 12568 mRNA_4200 0.33 0.1
1,595,458 + 12568 mRNA_4200 0.34 0.3
1,595,498 - 12568 mRNA_4200 0.42 -0.4
1,595,583 + 12568 mRNA_4200 0.59 1.1
1,595,837 + -0.6
1,596,015 - 0.0
1,596,034 - 0.1
1,596,135 + -1.3
1,596,160 - 1.8
1,596,617 + 12569 mRNA_4201 0.85 0.0
1,596,771 + 1.0